RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 XAGE3Q8WTP9 111 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 PODXL2Q9NZ53 605 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 FZD1Q9UP38 647 aa16.14■□□□□ 0.17
SHMT2-230ENST00000557427 SUPT16HQ9Y5B9 1047 aaKnown RBP16.14■□□□□ 0.17
SHMT2-230ENST00000557427 PSME4Q14997 1843 aa16.13■□□□□ 0.17
SHMT2-230ENST00000557427 LMOD3Q0VAK6 560 aa16.13■□□□□ 0.17
SHMT2-230ENST00000557427 NECTIN2Q92692 538 aa16.13■□□□□ 0.17
SHMT2-230ENST00000557427 FAM89AQ96GI7 184 aa16.13■□□□□ 0.17
SHMT2-230ENST00000557427 RPS8P62241 208 aaKnown RBP16.12■□□□□ 0.17
SHMT2-230ENST00000557427 CHRDL2Q6WN34 429 aa16.12■□□□□ 0.17
SHMT2-230ENST00000557427 ZNF333Q96JL9 665 aa16.12■□□□□ 0.17
SHMT2-230ENST00000557427 RBM27Q9P2N5 1060 aaKnown RBP16.12■□□□□ 0.17
SHMT2-230ENST00000557427 TRIM35Q9UPQ4 493 aa16.12■□□□□ 0.17
SHMT2-230ENST00000557427 WNT10BO00744 389 aa16.11■□□□□ 0.17
SHMT2-230ENST00000557427 APAF1O14727 1248 aa16.11■□□□□ 0.17
SHMT2-230ENST00000557427 UFL1O94874 794 aa16.11■□□□□ 0.17
SHMT2-230ENST00000557427 MXD3Q9BW11 206 aa16.11■□□□□ 0.17
SHMT2-230ENST00000557427 MANSC4A6NHS7 340 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-230ENST00000557427 WTIPA6NIX2 430 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-230ENST00000557427 G3V3G9 751 aa16.1■□□□□ 0.17
SHMT2-230ENST00000557427 NEFLP07196 543 aa16.1■□□□□ 0.17
SHMT2-230ENST00000557427 DCAF8Q5TAQ9 597 aa16.1■□□□□ 0.17
SHMT2-230ENST00000557427 ARMC9Q7Z3E5 817 aa16.1■□□□□ 0.17
SHMT2-230ENST00000557427 ERO1AQ96HE7 468 aa16.1■□□□□ 0.17
SHMT2-230ENST00000557427 EFCC1Q9HA90 598 aa16.1■□□□□ 0.17
SHMT2-230ENST00000557427 SEC31BQ9NQW1 1179 aa16.1■□□□□ 0.17
SHMT2-230ENST00000557427 NF2P35240 595 aa16.09■□□□□ 0.17
SHMT2-230ENST00000557427 INHBEP58166 350 aa16.09■□□□□ 0.17
SHMT2-230ENST00000557427 CRHR2Q13324 411 aa16.09■□□□□ 0.17
SHMT2-230ENST00000557427 RTL5Q5HYW3 569 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-230ENST00000557427 TMEM106CQ9BVX2 250 aa16.09■□□□□ 0.17
SHMT2-230ENST00000557427 GGA1Q9UJY5 639 aa16.09■□□□□ 0.17
SHMT2-230ENST00000557427 ANGEL1Q9UNK9 670 aaKnown RBP16.09■□□□□ 0.17
SHMT2-230ENST00000557427 CUL9Q8IWT3 2517 aa16.08■□□□□ 0.17
SHMT2-230ENST00000557427 USP17L3A6NCW0 530 aa16.08■□□□□ 0.16
SHMT2-230ENST00000557427 USP17L4A6NCW7 530 aa16.08■□□□□ 0.16
SHMT2-230ENST00000557427 USP17L1Q7RTZ2 530 aa16.08■□□□□ 0.16
SHMT2-230ENST00000557427 CLMNQ96JQ2 1002 aa16.08■□□□□ 0.16
SHMT2-230ENST00000557427 ISCA1Q9BUE6 129 aa16.08■□□□□ 0.16
SHMT2-230ENST00000557427 ANKIB1Q9P2G1 1089 aa16.08■□□□□ 0.16
SHMT2-230ENST00000557427 ATP5J2-PTCD1G3V325 749 aa16.07■□□□□ 0.16
SHMT2-230ENST00000557427 CHL1O00533 1208 aa16.07■□□□□ 0.16
SHMT2-230ENST00000557427 SASH1O94885 1247 aa16.07■□□□□ 0.16
SHMT2-230ENST00000557427 PTPN18Q99952 460 aa16.07■□□□□ 0.16
SHMT2-230ENST00000557427 PRO3102Q9H379 93 aa16.07■□□□□ 0.16
SHMT2-230ENST00000557427 BABAM1Q9NWV8 329 aa16.07■□□□□ 0.16
SHMT2-230ENST00000557427 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-230ENST00000557427 LAMB1P07942 1786 aa16.07■□□□□ 0.16
SHMT2-230ENST00000557427 ZNF646O15015 1829 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-230ENST00000557427 DACT2Q5SW24 774 aa16.06■□□□□ 0.16
SHMT2-230ENST00000557427 PODNQ7Z5L7 613 aa16.06■□□□□ 0.16
SHMT2-230ENST00000557427 SLC10A4Q96EP9 437 aa16.06■□□□□ 0.16
SHMT2-230ENST00000557427 WNK4Q96J92 1243 aa16.06■□□□□ 0.16
SHMT2-230ENST00000557427 PTCH2Q9Y6C5 1203 aa16.06■□□□□ 0.16
SHMT2-230ENST00000557427 IRS4O14654 1257 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-230ENST00000557427 ZBTB48P10074 688 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-230ENST00000557427 GJA5P36382 358 aa16.05■□□□□ 0.16
SHMT2-230ENST00000557427 SP3Q02447 781 aa16.05■□□□□ 0.16
SHMT2-230ENST00000557427 MAP3K11Q16584 847 aa16.05■□□□□ 0.16
SHMT2-230ENST00000557427 KRT24Q2M2I5 525 aa16.05■□□□□ 0.16
SHMT2-230ENST00000557427 SSC5DA1L4H1 1573 aa16.04■□□□□ 0.16
SHMT2-230ENST00000557427 MYCP01106 439 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-230ENST00000557427 SLC4A8Q2Y0W8 1093 aa16.04■□□□□ 0.16
SHMT2-230ENST00000557427 SLC9C1Q4G0N8 1177 aa16.03■□□□□ 0.16
SHMT2-230ENST00000557427 PLBD2Q8NHP8 589 aa16.03■□□□□ 0.16
SHMT2-230ENST00000557427 ZBED3Q96IU2 234 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-230ENST00000557427 LAMA3Q16787 3333 aa16.02■□□□□ 0.16
SHMT2-230ENST00000557427 OGFOD1Q8N543 542 aa16.02■□□□□ 0.16
SHMT2-230ENST00000557427 TESPA1A2RU30 521 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-230ENST00000557427 SOX1O00570 391 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-230ENST00000557427 ANKRD13DQ6ZTN6 518 aa16.01■□□□□ 0.15
SHMT2-230ENST00000557427 NBPF11Q86T75 865 aa16.01■□□□□ 0.15
SHMT2-230ENST00000557427 APOBEC3FQ8IUX4 373 aaKnown RBP16.01■□□□□ 0.15
SHMT2-230ENST00000557427 SH3TC2Q8TF17 1288 aa16.01■□□□□ 0.15
SHMT2-230ENST00000557427 SHISA4Q96DD7 197 aa16.01■□□□□ 0.15
SHMT2-230ENST00000557427 DEFB129Q9H1M3 183 aa16.01■□□□□ 0.15
SHMT2-230ENST00000557427 CHPF2Q9P2E5 772 aa16.01■□□□□ 0.15
SHMT2-230ENST00000557427 XDHP47989 1333 aa16■□□□□ 0.15
SHMT2-230ENST00000557427 ELL2O00472 640 aaPredicted RBP16■□□□□ 0.15
SHMT2-230ENST00000557427 ATP2B4P23634 1241 aa16■□□□□ 0.15
SHMT2-230ENST00000557427 DPF3Q92784 378 aa16■□□□□ 0.15
SHMT2-230ENST00000557427 MBIPQ9NS73 344 aa16■□□□□ 0.15
SHMT2-230ENST00000557427 MNX1P50219 401 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-230ENST00000557427 TRIM28Q13263 835 aaKnown RBP15.99■□□□□ 0.15
SHMT2-230ENST00000557427 STRIP1Q5VSL9 837 aa15.99■□□□□ 0.15
SHMT2-230ENST00000557427 ERICH6BQ5W0A0 696 aa15.99■□□□□ 0.15
SHMT2-230ENST00000557427 CCDC85AQ96PX6 553 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-230ENST00000557427 SALL2Q9Y467 1007 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-230ENST00000557427 ZNF853P0CG23 659 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 GNAI1P63096 354 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 CALD1Q05682 793 aaKnown RBP15.98■□□□□ 0.15
SHMT2-230ENST00000557427 DUSP27Q5VZP5 1158 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 OTUD7BQ6GQQ9 843 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 TXNRD3Q86VQ6 643 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 ZBTB38Q8NAP3 1195 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-230ENST00000557427 FBXW7Q969H0 707 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 LRCH3Q96II8 777 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 PCDHAC2Q9Y5I4 1007 aa15.98■□□□□ 0.15
SHMT2-230ENST00000557427 MYO3BQ8WXR4 1341 aa15.97■□□□□ 0.15
SHMT2-230ENST00000557427 ZSWIM8A7E2V4 1837 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms