RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 TTLL5Q6EMB2 1281 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 Q6ZUG5 572 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 ALDH8A1Q9H2A2 487 aaPredicted RBP12.06□□□□□ -0.48
TMEM260-211ENST00000556648 CNNM1Q9NRU3 951 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 ISY1Q9ULR0 285 aaKnown RBP12.06□□□□□ -0.48
TMEM260-211ENST00000556648 COL5A3P25940 1745 aaPredicted RBP12.06□□□□□ -0.48
TMEM260-211ENST00000556648 MYH7P12883 1935 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 VPS37CA5D8V6 355 aaPredicted RBP12.06□□□□□ -0.48
TMEM260-211ENST00000556648 MCAMP43121 646 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 KCNQ4P56696 695 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 KRT32Q14532 448 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 BARGINQ6ZT62 677 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 HELBQ8NG08 1087 aaPredicted RBP12.06□□□□□ -0.48
TMEM260-211ENST00000556648 DSCC1Q9BVC3 393 aa12.06□□□□□ -0.48
TMEM260-211ENST00000556648 ARAP2Q8WZ64 1704 aa12.05□□□□□ -0.48
TMEM260-211ENST00000556648 SYCE3A1L190 88 aa12.05□□□□□ -0.48
TMEM260-211ENST00000556648 JAK2O60674 1132 aa12.05□□□□□ -0.48
TMEM260-211ENST00000556648 FAM98CQ17RN3 349 aaKnown RBP12.05□□□□□ -0.48
TMEM260-211ENST00000556648 CDC37L1Q7L3B6 337 aa12.05□□□□□ -0.48
TMEM260-211ENST00000556648 PTF1AQ7RTS3 328 aa12.05□□□□□ -0.48
TMEM260-211ENST00000556648 BCORQ6W2J9 1755 aa12.05□□□□□ -0.48
TMEM260-211ENST00000556648 SNAP23O00161 211 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 ANKRD1Q15327 319 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 SMIM5Q71RC9 77 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 RBSNQ9H1K0 784 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 SEC31BQ9NQW1 1179 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 LAMB2P55268 1798 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 FIBPO43427 364 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 MBD3O95983 291 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 PHKA1P46020 1223 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 DNM1Q05193 864 aaKnown RBP12.04□□□□□ -0.48
TMEM260-211ENST00000556648 WASHC4Q2M389 1173 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 TMEM87AQ8NBN3 555 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 BRF1Q92994 677 aa12.04□□□□□ -0.48
TMEM260-211ENST00000556648 PIH1D3Q9NQM4 214 aaKnown RBP12.04□□□□□ -0.48
TMEM260-211ENST00000556648 ABCC12Q96J65 1359 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 E7EWF7 191 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 HSP90B1P14625 803 aaKnown RBP12.03□□□□□ -0.48
TMEM260-211ENST00000556648 LINC00116Q8NCU8 138 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 GTF3C6Q969F1 213 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 C8orf37Q96NL8 207 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 PUS7LQ9H0K6 701 aaKnown RBP12.03□□□□□ -0.48
TMEM260-211ENST00000556648 PDE8BO95263 885 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 NTSR2O95665 410 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 HAND2P61296 217 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 FAM173BQ6P4H8 233 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 CHST3Q7LGC8 479 aa12.03□□□□□ -0.48
TMEM260-211ENST00000556648 UTP14AQ9BVJ6 771 aaKnown RBP12.03□□□□□ -0.48
TMEM260-211ENST00000556648 BCL9LQ86UU0 1499 aa12.02□□□□□ -0.48
TMEM260-211ENST00000556648 NASPP49321 788 aaPredicted RBP12.02□□□□□ -0.49
TMEM260-211ENST00000556648 EXOSC10Q01780 885 aaKnown RBP12.02□□□□□ -0.49
TMEM260-211ENST00000556648 APOBRQ0VD83 1088 aa12.02□□□□□ -0.49
TMEM260-211ENST00000556648 SCRN1Q12765 414 aa12.02□□□□□ -0.49
TMEM260-211ENST00000556648 LARP1BQ659C4 914 aaKnown RBP12.02□□□□□ -0.49
TMEM260-211ENST00000556648 FERMT3Q86UX7 667 aa12.02□□□□□ -0.49
TMEM260-211ENST00000556648 APPBP2Q92624 585 aa12.02□□□□□ -0.49
TMEM260-211ENST00000556648 RRAGDQ9NQL2 400 aaPredicted RBP12.02□□□□□ -0.49
TMEM260-211ENST00000556648 NIP7Q9Y221 180 aaKnown RBP eCLIP12.02□□□□□ -0.49
TMEM260-211ENST00000556648 CASZ1Q86V15 1759 aa12.02□□□□□ -0.49
TMEM260-211ENST00000556648 TOM1O60784 492 aa12.01□□□□□ -0.49
TMEM260-211ENST00000556648 FGFR2P21802 821 aa12.01□□□□□ -0.49
TMEM260-211ENST00000556648 CCDC102BQ68D86 513 aa12.01□□□□□ -0.49
TMEM260-211ENST00000556648 DHX32Q7L7V1 743 aaKnown RBP12.01□□□□□ -0.49
TMEM260-211ENST00000556648 GPHNQ9NQX3 736 aaPredicted RBP12.01□□□□□ -0.49
TMEM260-211ENST00000556648 FOSBP53539 338 aa12.01□□□□□ -0.49
TMEM260-211ENST00000556648 LRSAM1Q6UWE0 723 aa12.01□□□□□ -0.49
TMEM260-211ENST00000556648 C3orf67Q6ZVT6 689 aa12.01□□□□□ -0.49
TMEM260-211ENST00000556648 DDX11Q96FC9 970 aa12.01□□□□□ -0.49
TMEM260-211ENST00000556648 UBAP1LF5GYI3 381 aa12□□□□□ -0.49
TMEM260-211ENST00000556648 GPAA1O43292 621 aa12□□□□□ -0.49
TMEM260-211ENST00000556648 ZFYP08048 801 aaPredicted RBP12□□□□□ -0.49
TMEM260-211ENST00000556648 ADD2P35612 726 aa12□□□□□ -0.49
TMEM260-211ENST00000556648 PUM3Q15397 648 aaKnown RBP12□□□□□ -0.49
TMEM260-211ENST00000556648 TICAM2Q86XR7 235 aa12□□□□□ -0.49
TMEM260-211ENST00000556648 WWC3Q9ULE0 1092 aa12□□□□□ -0.49
TMEM260-211ENST00000556648 TAF1P21675 1872 aa12□□□□□ -0.49
TMEM260-211ENST00000556648 MROH5Q6ZUA9 1318 aa12□□□□□ -0.49
TMEM260-211ENST00000556648 PPFIA3O75145 1194 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 CTDNEP1O95476 244 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 ARID4AP29374 1257 aaPredicted RBP11.99□□□□□ -0.49
TMEM260-211ENST00000556648 FGD1P98174 961 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 NKX2-3Q8TAU0 364 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 NCOA5Q9HCD5 579 aaKnown RBP11.99□□□□□ -0.49
TMEM260-211ENST00000556648 A0A1B0GUL6 1792 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 PFKFB2O60825 505 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 IDH1O75874 414 aaKnown RBP11.99□□□□□ -0.49
TMEM260-211ENST00000556648 ATRNO75882 1429 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 FGAP02671 866 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 CCT2P78371 535 aaKnown RBP11.99□□□□□ -0.49
TMEM260-211ENST00000556648 VPS72Q15906 364 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 PARP10Q53GL7 1025 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 FAM182BQ5T319 152 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 FAM43AQ8N2R8 423 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 SMARCC1Q92922 1105 aaPredicted RBP11.99□□□□□ -0.49
TMEM260-211ENST00000556648 NGLY1Q96IV0 654 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 ZNF512BQ96KM6 892 aaPredicted RBP11.99□□□□□ -0.49
TMEM260-211ENST00000556648 AK7Q96M32 723 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 NBPF3Q9H094 633 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 DENND2AQ9ULE3 1009 aa11.99□□□□□ -0.49
TMEM260-211ENST00000556648 SCN7AQ01118 1682 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms