RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 NIM1KQ8IY84 436 aa8.15□□□□□ -1.1
TMEM260-209ENST00000556079 TTLL11Q8NHH1 800 aa8.15□□□□□ -1.1
TMEM260-209ENST00000556079 SSH1Q8WYL5 1049 aa8.15□□□□□ -1.1
TMEM260-209ENST00000556079 RTFDC1Q9BY42 306 aaPredicted RBP8.15□□□□□ -1.1
TMEM260-209ENST00000556079 NSFL1CQ9UNZ2 370 aaKnown RBP8.15□□□□□ -1.1
TMEM260-209ENST00000556079 RTL9Q8NET4 1388 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 CDHR2Q9BYE9 1310 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 WDR33Q9C0J8 1336 aaKnown RBP8.14□□□□□ -1.11
TMEM260-209ENST00000556079 POLR2AP24928 1970 aaKnown RBP8.14□□□□□ -1.11
TMEM260-209ENST00000556079 RASSF10A6NK89 507 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 C6orf229H3BNL8 230 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 CCER2I3L3R5 266 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 UFL1O94874 794 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 EGFRP00533 1210 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 RPS8P62241 208 aaKnown RBP8.14□□□□□ -1.11
TMEM260-209ENST00000556079 FOXO4P98177 505 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 KIAA2012Q0VF49 1180 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 GRM1Q13255 1194 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 TBC1D16Q8TBP0 767 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 JDP2Q8WYK2 163 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 ZNF594Q96JF6 807 aaPredicted RBP8.14□□□□□ -1.11
TMEM260-209ENST00000556079 MXD3Q9BW11 206 aa8.14□□□□□ -1.11
TMEM260-209ENST00000556079 ABT1Q9ULW3 272 aaKnown RBP8.14□□□□□ -1.11
TMEM260-209ENST00000556079 PSME4Q14997 1843 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 ASTN2O75129 1339 aaPredicted RBP8.13□□□□□ -1.11
TMEM260-209ENST00000556079 TRAF5O00463 557 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 EIF6P56537 245 aaKnown RBP8.13□□□□□ -1.11
TMEM260-209ENST00000556079 NEXNQ0ZGT2 675 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 CCDC152Q4G0S7 254 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 CC2D2BQ6DHV5 1058 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 MAMSTRQ6ZN01 415 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 PAXIP1Q6ZW49 1069 aaPredicted RBP8.13□□□□□ -1.11
TMEM260-209ENST00000556079 PNMA8AQ86V59 439 aaPredicted RBP8.13□□□□□ -1.11
TMEM260-209ENST00000556079 TXNRD3Q86VQ6 643 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 GPC2Q8N158 579 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 HELBQ8NG08 1087 aaPredicted RBP8.13□□□□□ -1.11
TMEM260-209ENST00000556079 LINS1Q8NG48 757 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 TRPM4Q8TD43 1214 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 ABHD8Q96I13 439 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 KAZALD1Q96I82 304 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 SUCLG2Q96I99 432 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 SCUBE2Q9NQ36 999 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 TSKSQ9UJT2 592 aa8.13□□□□□ -1.11
TMEM260-209ENST00000556079 E9PSI1 815 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 PSMD14O00487 310 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 ECE2O60344 883 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 NBPF7P0C2Y1 421 aaPredicted RBP8.12□□□□□ -1.11
TMEM260-209ENST00000556079 ITGA6P23229 1130 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 HIRAP54198 1017 aaPredicted RBP8.12□□□□□ -1.11
TMEM260-209ENST00000556079 MKRN3Q13064 507 aaKnown RBP8.12□□□□□ -1.11
TMEM260-209ENST00000556079 PDAP1Q13442 181 aaKnown RBP8.12□□□□□ -1.11
TMEM260-209ENST00000556079 CYP4F22Q6NT55 531 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 ANKRD18AQ8IVF6 992 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 TRMT2AQ8IZ69 625 aaKnown RBP8.12□□□□□ -1.11
TMEM260-209ENST00000556079 ZNRF3Q9ULT6 936 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 MINPP1Q9UNW1 487 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 CHMP3Q9Y3E7 222 aa8.12□□□□□ -1.11
TMEM260-209ENST00000556079 AOC2O75106 756 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 TAF5LO75529 589 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 IRX5P78411 483 aaPredicted RBP8.11□□□□□ -1.11
TMEM260-209ENST00000556079 MAP2K1Q02750 393 aaPredicted RBP8.11□□□□□ -1.11
TMEM260-209ENST00000556079 WASHC4Q2M389 1173 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 CST9Q5W186 159 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 CIAPIN1Q6FI81 312 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 LMBR1LQ6UX01 489 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 CAPNS2Q96L46 248 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 PUS3Q9BZE2 481 aaKnown RBP8.11□□□□□ -1.11
TMEM260-209ENST00000556079 SMC4Q9NTJ3 1288 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 ANKIB1Q9P2G1 1089 aa8.11□□□□□ -1.11
TMEM260-209ENST00000556079 SCAF8Q9UPN6 1271 aaKnown RBP8.11□□□□□ -1.11
TMEM260-209ENST00000556079 TNRC18O15417 2968 aaPredicted RBP8.11□□□□□ -1.11
TMEM260-209ENST00000556079 CCDC85CA6NKD9 419 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 GRM8O00222 908 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 CSF1RP07333 972 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 LMOD1P29536 600 aaPredicted RBP8.1□□□□□ -1.11
TMEM260-209ENST00000556079 TBC1D10BQ4KMP7 808 aaPredicted RBP8.1□□□□□ -1.11
TMEM260-209ENST00000556079 RBM26Q5T8P6 1007 aaKnown RBP8.1□□□□□ -1.11
TMEM260-209ENST00000556079 SAMD7Q7Z3H4 446 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 ANKRD44Q8N8A2 993 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 SUPT20HQ8NEM7 779 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 KLHDC4Q8TBB5 520 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 PLA2G12BQ9BX93 195 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 GLIS2Q9BZE0 524 aaPredicted RBP8.1□□□□□ -1.11
TMEM260-209ENST00000556079 TMX4Q9H1E5 349 aaPredicted RBP8.1□□□□□ -1.11
TMEM260-209ENST00000556079 GPRC5DQ9NZD1 345 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 GGA1Q9UJY5 639 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 JAG2Q9Y219 1238 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 TRPM7Q96QT4 1865 aa8.1□□□□□ -1.11
TMEM260-209ENST00000556079 XDHP47989 1333 aa8.09□□□□□ -1.11
TMEM260-209ENST00000556079 PLIN1O60240 522 aa8.09□□□□□ -1.11
TMEM260-209ENST00000556079 HNRNPUQ00839 825 aaKnown RBP eCLIP8.09□□□□□ -1.11
TMEM260-209ENST00000556079 CHRNDQ07001 517 aa8.09□□□□□ -1.11
TMEM260-209ENST00000556079 MICALL2Q8IY33 904 aa8.09□□□□□ -1.11
TMEM260-209ENST00000556079 SRCIN1Q9C0H9 1055 aa8.09□□□□□ -1.11
TMEM260-209ENST00000556079 OCEL1Q9H607 264 aa8.09□□□□□ -1.11
TMEM260-209ENST00000556079 BICC1Q9H694 974 aaKnown RBP8.09□□□□□ -1.11
TMEM260-209ENST00000556079 PODXL2Q9NZ53 605 aa8.09□□□□□ -1.11
TMEM260-209ENST00000556079 NOB1Q9ULX3 412 aaKnown RBP8.09□□□□□ -1.11
TMEM260-209ENST00000556079 AOX1Q06278 1338 aa8.08□□□□□ -1.12
TMEM260-209ENST00000556079 IRS2Q9Y4H2 1338 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms