RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 SALL4Q9UJQ4 1053 aa8.54□□□□□ -1.04
SCFD1-217ENST00000555953 FSCN2O14926 492 aa8.53□□□□□ -1.04
SCFD1-217ENST00000555953 RPLP1P05386 114 aaKnown RBP8.53□□□□□ -1.04
SCFD1-217ENST00000555953 PTPRAP18433 802 aa8.53□□□□□ -1.04
SCFD1-217ENST00000555953 FSTP19883 344 aa8.53□□□□□ -1.04
SCFD1-217ENST00000555953 EIF1AXP47813 144 aaKnown RBP8.53□□□□□ -1.04
SCFD1-217ENST00000555953 MTMR3Q13615 1198 aa8.53□□□□□ -1.04
SCFD1-217ENST00000555953 ACAD11Q709F0 780 aa8.53□□□□□ -1.04
SCFD1-217ENST00000555953 ADAM19Q9H013 955 aa8.53□□□□□ -1.04
SCFD1-217ENST00000555953 RNF112Q9ULX5 631 aa8.53□□□□□ -1.04
SCFD1-217ENST00000555953 CES1P23141 567 aa8.52□□□□□ -1.05
SCFD1-217ENST00000555953 SSFA2P28290 1259 aa8.52□□□□□ -1.05
SCFD1-217ENST00000555953 NBPF11Q86T75 865 aa8.52□□□□□ -1.05
SCFD1-217ENST00000555953 PSMG3-AS1Q96PY0 264 aa8.52□□□□□ -1.05
SCFD1-217ENST00000555953 CHRDQ9H2X0 955 aa8.52□□□□□ -1.05
SCFD1-217ENST00000555953 GTF3C3Q9Y5Q9 886 aa8.52□□□□□ -1.05
SCFD1-217ENST00000555953 NFKBIEO00221 500 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 DDX3YO15523 660 aaKnown RBP8.51□□□□□ -1.05
SCFD1-217ENST00000555953 ADAM11O75078 769 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 PCSK2P16519 638 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 MZF1P28698 734 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-217ENST00000555953 C8orf34Q49A92 452 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 FAM117BQ6P1L5 589 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 KIAA1211Q6ZU35 1233 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 KLHL23Q8NBE8 558 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 FOXD4L4Q8WXT5 416 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-217ENST00000555953 HHIPQ96QV1 700 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 C1orf115Q9H7X2 142 aa8.51□□□□□ -1.05
SCFD1-217ENST00000555953 TRPA1O75762 1119 aa8.5□□□□□ -1.05
SCFD1-217ENST00000555953 KLHDC7BQ96G42 594 aa8.5□□□□□ -1.05
SCFD1-217ENST00000555953 DZANK1Q9NVP4 752 aa8.5□□□□□ -1.05
SCFD1-217ENST00000555953 H3BRJ5 948 aa8.49□□□□□ -1.05
SCFD1-217ENST00000555953 ARMC10Q8N2F6 343 aa8.49□□□□□ -1.05
SCFD1-217ENST00000555953 UBASH3BQ8TF42 649 aa8.49□□□□□ -1.05
SCFD1-217ENST00000555953 SEC31BQ9NQW1 1179 aa8.49□□□□□ -1.05
SCFD1-217ENST00000555953 POLIQ9UNA4 740 aa8.49□□□□□ -1.05
SCFD1-217ENST00000555953 RAXQ9Y2V3 346 aa8.49□□□□□ -1.05
SCFD1-217ENST00000555953 PDE2AO00408 941 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-217ENST00000555953 PPP1R15AO75807 674 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-217ENST00000555953 DUOXA2Q1HG44 320 aa8.48□□□□□ -1.05
SCFD1-217ENST00000555953 TTC16Q8NEE8 873 aa8.48□□□□□ -1.05
SCFD1-217ENST00000555953 CEP41Q9BYV8 373 aa8.48□□□□□ -1.05
SCFD1-217ENST00000555953 CARNS1A5YM72 827 aa8.47□□□□□ -1.05
SCFD1-217ENST00000555953 FAM177BA6PVY3 158 aa8.47□□□□□ -1.05
SCFD1-217ENST00000555953 NPR3P17342 541 aa8.47□□□□□ -1.05
SCFD1-217ENST00000555953 PIP4K2BP78356 416 aa8.47□□□□□ -1.05
SCFD1-217ENST00000555953 PHLDB3Q6NSJ2 640 aa8.47□□□□□ -1.05
SCFD1-217ENST00000555953 SLC51AQ86UW1 340 aa8.47□□□□□ -1.05
SCFD1-217ENST00000555953 FAM46AQ96IP4 442 aaKnown RBP8.47□□□□□ -1.05
SCFD1-217ENST00000555953 DHX15O43143 795 aaKnown RBP8.46□□□□□ -1.06
SCFD1-217ENST00000555953 CABP4P57796 275 aa8.46□□□□□ -1.06
SCFD1-217ENST00000555953 ALKBH2Q6NS38 261 aa8.46□□□□□ -1.06
SCFD1-217ENST00000555953 WNT8BQ93098 351 aa8.46□□□□□ -1.06
SCFD1-217ENST00000555953 STOML1Q9UBI4 398 aa8.46□□□□□ -1.06
SCFD1-217ENST00000555953 SOX13Q9UN79 622 aa8.46□□□□□ -1.06
SCFD1-217ENST00000555953 EREGO14944 169 aa8.45□□□□□ -1.06
SCFD1-217ENST00000555953 TNFRSF21O75509 655 aa8.45□□□□□ -1.06
SCFD1-217ENST00000555953 UVSSAQ2YD98 709 aa8.45□□□□□ -1.06
SCFD1-217ENST00000555953 HGSNATQ68CP4 663 aa8.45□□□□□ -1.06
SCFD1-217ENST00000555953 TMEM102Q8N9M5 508 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-217ENST00000555953 PMEPA1Q969W9 287 aa8.45□□□□□ -1.06
SCFD1-217ENST00000555953 UTP4Q969X6 686 aaKnown RBP8.45□□□□□ -1.06
SCFD1-217ENST00000555953 OSGEPQ9NPF4 335 aa8.45□□□□□ -1.06
SCFD1-217ENST00000555953 IGLV1-40P01703 118 aa8.44□□□□□ -1.06
SCFD1-217ENST00000555953 NLRP12P59046 1061 aa8.44□□□□□ -1.06
SCFD1-217ENST00000555953 AAMPQ13685 434 aa8.44□□□□□ -1.06
SCFD1-217ENST00000555953 SLC7A3Q8WY07 619 aa8.44□□□□□ -1.06
SCFD1-217ENST00000555953 OSMRQ99650 979 aa8.44□□□□□ -1.06
SCFD1-217ENST00000555953 ZKSCAN3Q9BRR0 538 aa8.44□□□□□ -1.06
SCFD1-217ENST00000555953 FOXD3Q9UJU5 478 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-217ENST00000555953 FZD6O60353 706 aa8.43□□□□□ -1.06
SCFD1-217ENST00000555953 PHACTR2O75167 634 aa8.43□□□□□ -1.06
SCFD1-217ENST00000555953 FAM13AO94988 1023 aa8.43□□□□□ -1.06
SCFD1-217ENST00000555953 SSTR4P31391 388 aa8.43□□□□□ -1.06
SCFD1-217ENST00000555953 NXPE3Q969Y0 559 aa8.43□□□□□ -1.06
SCFD1-217ENST00000555953 MYRFLQ96LU7 910 aa8.43□□□□□ -1.06
SCFD1-217ENST00000555953 C7orf69Q9H7B7 122 aa8.43□□□□□ -1.06
SCFD1-217ENST00000555953 GSC2O15499 205 aa8.42□□□□□ -1.06
SCFD1-217ENST00000555953 CD97P48960 835 aa8.42□□□□□ -1.06
SCFD1-217ENST00000555953 VN1R5Q7Z5H4 357 aa8.42□□□□□ -1.06
SCFD1-217ENST00000555953 SNX29Q8TEQ0 813 aa8.42□□□□□ -1.06
SCFD1-217ENST00000555953 KRTAP9-2Q9BYQ4 174 aa8.42□□□□□ -1.06
SCFD1-217ENST00000555953 ANO2Q9NQ90 1003 aa8.42□□□□□ -1.06
SCFD1-217ENST00000555953 PCMTD2Q9NV79 361 aa8.42□□□□□ -1.06
SCFD1-217ENST00000555953 HMX2A2RU54 273 aa8.41□□□□□ -1.06
SCFD1-217ENST00000555953 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-217ENST00000555953 PREPP48147 710 aa8.41□□□□□ -1.06
SCFD1-217ENST00000555953 FKBP4Q02790 459 aaKnown RBP eCLIP8.41□□□□□ -1.06
SCFD1-217ENST00000555953 ZNF211Q13398 564 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-217ENST00000555953 SF3B2Q13435 895 aaKnown RBP8.41□□□□□ -1.06
SCFD1-217ENST00000555953 TRIM42Q8IWZ5 723 aa8.41□□□□□ -1.06
SCFD1-217ENST00000555953 BSNDQ8WZ55 320 aa8.41□□□□□ -1.06
SCFD1-217ENST00000555953 CCDC87Q9NVE4 849 aa8.41□□□□□ -1.06
SCFD1-217ENST00000555953 SOX1O00570 391 aaPredicted RBP8.4□□□□□ -1.06
SCFD1-217ENST00000555953 MED26O95402 600 aa8.4□□□□□ -1.06
SCFD1-217ENST00000555953 ABL1P00519 1130 aa8.4□□□□□ -1.06
SCFD1-217ENST00000555953 TGFB1P01137 390 aa8.4□□□□□ -1.06
SCFD1-217ENST00000555953 EDN3P14138 238 aa8.4□□□□□ -1.06
SCFD1-217ENST00000555953 USP5P45974 858 aa8.4□□□□□ -1.06
SCFD1-217ENST00000555953 EHHADHQ08426 723 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms