RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 HELBQ8NG08 1087 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-220ENST00000555634 MED23Q9ULK4 1368 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 DOCK2Q92608 1830 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 A0A0G2JLW4 131 aa13.66□□□□□ -0.22
SHMT2-220ENST00000555634 C6orf229H3BNL8 230 aa13.66□□□□□ -0.22
SHMT2-220ENST00000555634 FRAT2O75474 233 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-220ENST00000555634 TAF5LO75529 589 aa13.66□□□□□ -0.22
SHMT2-220ENST00000555634 CCDC8Q9H0W5 538 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-220ENST00000555634 PODXL2Q9NZ53 605 aa13.66□□□□□ -0.22
SHMT2-220ENST00000555634 PSME4Q14997 1843 aa13.66□□□□□ -0.22
SHMT2-220ENST00000555634 EIF5BO60841 1220 aaKnown RBP13.65□□□□□ -0.22
SHMT2-220ENST00000555634 PDE1AP54750 535 aa13.65□□□□□ -0.22
SHMT2-220ENST00000555634 LRRFIP1Q32MZ4 808 aaKnown RBP13.65□□□□□ -0.22
SHMT2-220ENST00000555634 EAF2Q96CJ1 260 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-220ENST00000555634 XAGE2Q96GT9 111 aa13.65□□□□□ -0.22
SHMT2-220ENST00000555634 AKAP11Q9UKA4 1901 aa13.64□□□□□ -0.23
SHMT2-220ENST00000555634 GPSM2P81274 684 aa13.64□□□□□ -0.23
SHMT2-220ENST00000555634 IFFO2Q5TF58 517 aa13.64□□□□□ -0.23
SHMT2-220ENST00000555634 CNTROBQ8N137 903 aa13.64□□□□□ -0.23
SHMT2-220ENST00000555634 DBNDD2Q9BQY9 259 aa13.64□□□□□ -0.23
SHMT2-220ENST00000555634 FHDC1Q9C0D6 1143 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-220ENST00000555634 OSBPL3Q9H4L5 887 aa13.64□□□□□ -0.23
SHMT2-220ENST00000555634 STAP2Q9UGK3 403 aa13.64□□□□□ -0.23
SHMT2-220ENST00000555634 DBNLQ9UJU6 430 aaKnown RBP13.64□□□□□ -0.23
SHMT2-220ENST00000555634 DICER1Q9UPY3 1922 aaKnown RBP13.64□□□□□ -0.23
SHMT2-220ENST00000555634 TRIM6-TRIM34B2RNG4 842 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 SEMA3EO15041 775 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 C21orf2O43822 256 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 FGFR2P21802 821 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 PDE4AP27815 886 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 TIMM10P62072 90 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 BMP2KLQ5H9B9 411 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 TTC22Q5TAA0 569 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 PLEKHM2Q8IWE5 1019 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 ZC3H12CQ9C0D7 883 aaKnown RBP13.63□□□□□ -0.23
SHMT2-220ENST00000555634 ZNF219Q9P2Y4 722 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-220ENST00000555634 BCS1LQ9Y276 419 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 TIAM2Q8IVF5 1701 aa13.63□□□□□ -0.23
SHMT2-220ENST00000555634 ATP5JP18859 108 aa13.62□□□□□ -0.23
SHMT2-220ENST00000555634 HIBADHP31937 336 aaKnown RBP13.62□□□□□ -0.23
SHMT2-220ENST00000555634 TTF1Q15361 905 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-220ENST00000555634 WASHC4Q2M389 1173 aa13.62□□□□□ -0.23
SHMT2-220ENST00000555634 TBC1D16Q8TBP0 767 aa13.62□□□□□ -0.23
SHMT2-220ENST00000555634 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.62□□□□□ -0.23
SHMT2-220ENST00000555634 TLR7Q9NYK1 1049 aaKnown RBP13.62□□□□□ -0.23
SHMT2-220ENST00000555634 CCDC102BQ68D86 513 aa13.61□□□□□ -0.23
SHMT2-220ENST00000555634 C16orf71Q8IYS4 520 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-220ENST00000555634 ZGPATQ8N5A5 531 aaKnown RBP13.61□□□□□ -0.23
SHMT2-220ENST00000555634 ZNF512BQ96KM6 892 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-220ENST00000555634 DNAJC2Q99543 621 aaKnown RBP13.61□□□□□ -0.23
SHMT2-220ENST00000555634 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.61□□□□□ -0.236e-7■■□□□ 14.2
SHMT2-220ENST00000555634 TAOK3Q9H2K8 898 aa13.61□□□□□ -0.23
SHMT2-220ENST00000555634 SALL3Q9BXA9 1300 aa13.61□□□□□ -0.23
SHMT2-220ENST00000555634 RFX7Q2KHR2 1363 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 HIP1O00291 1037 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 ARID4AP29374 1257 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-220ENST00000555634 ADORA1P30542 326 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 C15orf52Q6ZUT6 534 aaKnown RBP13.6□□□□□ -0.23
SHMT2-220ENST00000555634 OTUD7AQ8TE49 926 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-220ENST00000555634 RILPL2Q969X0 211 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 PSMD1Q99460 953 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 FSD1Q9BTV5 496 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 VPS33BQ9H267 617 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 DENND2AQ9ULE3 1009 aa13.6□□□□□ -0.23
SHMT2-220ENST00000555634 MYO5AQ9Y4I1 1855 aaKnown RBP13.6□□□□□ -0.23
SHMT2-220ENST00000555634 KCNA3P22001 575 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 GYG1P46976 350 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 FKBP4Q02790 459 aaKnown RBP eCLIP13.59□□□□□ -0.23
SHMT2-220ENST00000555634 TSHZ3Q63HK5 1081 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 NLGN2Q8NFZ4 835 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 PI4K2BQ8TCG2 481 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 EVI5LQ96CN4 794 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 COA1Q9GZY4 146 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 PAG1Q9NWQ8 432 aa13.59□□□□□ -0.23
SHMT2-220ENST00000555634 PDS5AQ29RF7 1337 aaKnown RBP13.59□□□□□ -0.23
SHMT2-220ENST00000555634 DCAF8L1A6NGE4 600 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 PPIP5K2O43314 1243 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 PHKA1P46020 1223 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 ZSCAN25Q6NSZ9 544 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 SPATA5Q8NB90 893 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 HAUS7Q99871 368 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 SYT17Q9BSW7 474 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 RTFDC1Q9BY42 306 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-220ENST00000555634 BOLA2Q9H3K6 86 aa13.58□□□□□ -0.24
SHMT2-220ENST00000555634 SBF1O95248 1867 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 RIMBP2O15034 1052 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 CDC45O75419 566 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 BCAMP50895 628 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 TICAM2Q86XR7 235 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 LARGE2Q8N3Y3 721 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 TBC1D22AQ8WUA7 517 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 RUFY2Q8WXA3 655 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 DIAPH3Q9NSV4 1193 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 POLLQ9UGP5 575 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 WWC3Q9ULE0 1092 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-220ENST00000555634 LTBP3Q9NS15 1303 aa13.57□□□□□ -0.24
SHMT2-220ENST00000555634 MYH2Q9UKX2 1941 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 GOLIM4O00461 696 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 KIAA2012Q0VF49 1180 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms