RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-217	ENST00000555022	NRDC	O43847	1150 aa		10.31	□□□□□ -0.76
SYNE2-217	ENST00000555022	H2AFX	P16104	143 aa	Predicted RBP	10.31	□□□□□ -0.76
SYNE2-217	ENST00000555022	KLHL10	Q6JEL2	608 aa		10.31	□□□□□ -0.76
SYNE2-217	ENST00000555022	CCDC12	Q8WUD4	166 aa	Predicted RBP	10.31	□□□□□ -0.76
SYNE2-217	ENST00000555022	CLIC6	Q96NY7	704 aa		10.31	□□□□□ -0.76
SYNE2-217	ENST00000555022	PDE11A	Q9HCR9	933 aa		10.31	□□□□□ -0.76
SYNE2-217	ENST00000555022	IFT172	Q9UG01	1749 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	ELP1	O95163	1332 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	FOXN1	O15353	648 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	FAM160A1	Q05DH4	1040 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	TOGARAM2	Q6ZUX3	1019 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	MRPS27	Q92552	414 aa	Known RBP	10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	DBNDD2	Q9BQY9	259 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	BTBD11	A6QL63	1104 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	TPM4	P67936	248 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	IRX3	P78415	501 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	EPHA10	Q5JZY3	1008 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	GRAMD1C	Q8IYS0	662 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	DHX58	Q96C10	678 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	RASSF4	Q9H2L5	321 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	RERE	Q9P2R6	1566 aa		10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	SETD1B	Q9UPS6	1966 aa	Known RBP	10.3	□□□□□ -0.76
SYNE2-217	ENST00000555022	UBE2Q2L	H0YL09	131 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	TAF5L	O75529	589 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	ETF1	P62495	437 aa	Known RBP	10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	TFCP2	Q12800	502 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	RIC3	Q7Z5B4	369 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	NAT10	Q9H0A0	1025 aa	Known RBP	10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	ADCY9	O60503	1353 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	TTC41P	Q6P2S7	1318 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	CTDNEP1	O95476	244 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	TBC1D8	O95759	1140 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	TOP1	P11387	765 aa	Known RBP	10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	CASQ1	P31415	396 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	STX17	P56962	302 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	MRPS25	P82663	173 aa	Known RBP	10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	PPP2R3A	Q06190	1150 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	SYCP1	Q15431	976 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	NSUN7	Q8NE18	718 aa	Known RBP	10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	PARD6B	Q9BYG5	372 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	FANCL	Q9NW38	375 aa		10.29	□□□□□ -0.76
SYNE2-217	ENST00000555022	ZMYND10	O75800	440 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	ANKRD1	Q15327	319 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	COL15A1	P39059	1388 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	KIF13A	Q9H1H9	1805 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	ADD1	P35611	737 aa	Known RBP	10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	HSP90AB4P	Q58FF6	505 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	MYD88	Q99836	296 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	MYL10	Q9BUA6	226 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	TM6SF1	Q9BZW5	370 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	ESF1	Q9H501	851 aa	Known RBP	10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	DENND2A	Q9ULE3	1009 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	TADA3	O75528	432 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	GSDMD	P57764	484 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	TIMM10	P62072	90 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	TTC19	Q6DKK2	380 aa	Predicted RBP	10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	ABTB2	Q8N961	1025 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	ARFGAP3	Q9NP61	516 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	FAN1	Q9Y2M0	1017 aa		10.28	□□□□□ -0.76
SYNE2-217	ENST00000555022	LOC102724159	A0A0B4J2E5	919 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	CPLX1	O14810	134 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	NEMF	O60524	1076 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	ZNF202	O95125	648 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	GPS2	Q13227	327 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	DHX8	Q14562	1220 aa	Known RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	PWP2	Q15269	919 aa	Known RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	KCTD19	Q17RG1	926 aa	Predicted RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	WASHC4	Q2M389	1173 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	CC2D1A	Q6P1N0	951 aa	Predicted RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	SYNE3	Q6ZMZ3	975 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	ERC1	Q8IUD2	1116 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	RGS22	Q8NE09	1264 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	ZNF396	Q96N95	335 aa	Predicted RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	KIAA1468	Q9P260	1216 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	RRP15	Q9Y3B9	282 aa	Known RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	KIDINS220	Q9ULH0	1771 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	AOX1	Q06278	1338 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	CASP1	P29466	404 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	GTF2A1	P52655	376 aa	Predicted RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	DNAJC21	Q5F1R6	531 aa	Known RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	UBE3B	Q7Z3V4	1068 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	KLHL34	Q8N239	644 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	C8orf76	Q96K31	380 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	DBNL	Q9UJU6	430 aa	Known RBP	10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	ADAM21	Q9UKJ8	722 aa		10.27	□□□□□ -0.77
SYNE2-217	ENST00000555022	GOLGA8B	A8MQT2	603 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	PARP3	Q9Y6F1	533 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	KIF28P	B7ZC32	967 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	PFKFB1	P16118	471 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	CDC25B	P30305	580 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	RBM43	Q6ZSC3	357 aa	Known RBP	10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	GSPT2	Q8IYD1	628 aa	Known RBP	10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	PHKB	Q93100	1093 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	PPP2R2C	Q9Y2T4	447 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	SIGLEC1	Q9BZZ2	1709 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	MROH7-TTC4	A0A0A0MT08	1334 aa		10.26	□□□□□ -0.77
SYNE2-217	ENST00000555022	PES1	O00541	588 aa	Known RBP	10.26	□□□□□ -0.77

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