RNA–Protein interactions for RNA: ENST00000554393.2

PTCD2P1-201, Transcript of pentatricopeptide repeat domain 2 pseudogene 1, humanhuman

BASIC

Gene PTCD2P1, Length 1,136 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2P1-201ENST00000554393 UTYO14607 1347 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 ANKRD18BA2A2Z9 1011 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 TMEM88BA6NKF7 163 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 G3V3G9 751 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 H7C1D1 291 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 CCT4P50991 539 aaKnown RBP13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 DOK7Q18PE1 504 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 DCAF8Q5TAQ9 597 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 SLC4A10Q6U841 1118 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 SSH1Q8WYL5 1049 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 CDCA7LQ96GN5 454 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 GPR101Q96P66 508 aaPredicted RBP13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 MPHOSPH8Q99549 860 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 C9orf78Q9NZ63 289 aaPredicted RBP13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 PGAP2Q9UHJ9 254 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 CNOT7Q9UIV1 285 aaKnown RBP13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 LEMD3Q9Y2U8 911 aa13.17□□□□□ -0.3
PTCD2P1-201ENST00000554393 VIL1P09327 827 aaKnown RBP13.16□□□□□ -0.3
PTCD2P1-201ENST00000554393 IFIT5Q13325 482 aaKnown RBP13.16□□□□□ -0.3
PTCD2P1-201ENST00000554393 PODNQ7Z5L7 613 aa13.16□□□□□ -0.3
PTCD2P1-201ENST00000554393 MICALL2Q8IY33 904 aa13.16□□□□□ -0.3
PTCD2P1-201ENST00000554393 CNTNAP1P78357 1384 aa13.16□□□□□ -0.3
PTCD2P1-201ENST00000554393 POLR2AP24928 1970 aaKnown RBP13.16□□□□□ -0.3
PTCD2P1-201ENST00000554393 MNX1P50219 401 aaPredicted RBP13.15□□□□□ -0.3
PTCD2P1-201ENST00000554393 LMBR1LQ6UX01 489 aa13.15□□□□□ -0.3
PTCD2P1-201ENST00000554393 BRPF1P55201 1214 aaPredicted RBP13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 CCDC57Q2TAC2 916 aa13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 DIEXFQ68CQ4 756 aaKnown RBP13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 RSBN1LQ6PCB5 846 aaPredicted RBP13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 AGBL3Q8NEM8 1001 aa13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 TRPM4Q8TD43 1214 aa13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 COA1Q9GZY4 146 aa13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 KCNQ5Q9NR82 932 aa13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 SMC4Q9NTJ3 1288 aa13.14□□□□□ -0.31
PTCD2P1-201ENST00000554393 ZNF804BA4D1E1 1349 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 USP17L3A6NCW0 530 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 USP17L4A6NCW7 530 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 CTCFP49711 727 aaPredicted RBP13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 HIRAP54198 1017 aaPredicted RBP13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 CHRNDQ07001 517 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 EPHA10Q5JZY3 1008 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 USP17L1Q7RTZ2 530 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 CHMP3Q9Y3E7 222 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 THSD7BQ9C0I4 1608 aa13.13□□□□□ -0.31
PTCD2P1-201ENST00000554393 SHTN1A0MZ66 631 aa13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 RASSF10A6NK89 507 aa13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 NBPF7P0C2Y1 421 aaPredicted RBP13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 ZNF280AP59817 542 aaPredicted RBP13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 RABL6Q3YEC7 729 aaPredicted RBP13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 C15orf52Q6ZUT6 534 aaKnown RBP13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 CDC37L1Q7L3B6 337 aa13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 AIDAQ96BJ3 306 aa13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 KAZALD1Q96I82 304 aa13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 GMLQ99445 158 aa13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 MKRN1Q9UHC7 482 aaKnown RBP13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 MYO3BQ8WXR4 1341 aa13.12□□□□□ -0.31
PTCD2P1-201ENST00000554393 WTIPA6NIX2 430 aaPredicted RBP13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 CCDC85CA6NKD9 419 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 KCNJ4P48050 445 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 MMP14P50281 582 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 TAF7LQ5H9L4 462 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 STRIP1Q5VSL9 837 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 LDHAL6AQ6ZMR3 332 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 SAMD7Q7Z3H4 446 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 SUCLG2Q96I99 432 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 FARP1Q9Y4F1 1045 aaPredicted RBP13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 IRS2Q9Y4H2 1338 aa13.11□□□□□ -0.31
PTCD2P1-201ENST00000554393 TRAF5O00463 557 aa13.1□□□□□ -0.31
PTCD2P1-201ENST00000554393 KIF4BQ2VIQ3 1234 aa13.1□□□□□ -0.31
PTCD2P1-201ENST00000554393 TBC1D10BQ4KMP7 808 aaPredicted RBP13.1□□□□□ -0.31
PTCD2P1-201ENST00000554393 DACT2Q5SW24 774 aa13.1□□□□□ -0.31
PTCD2P1-201ENST00000554393 TXNRD3Q86VQ6 643 aa13.1□□□□□ -0.31
PTCD2P1-201ENST00000554393 KIF16BQ96L93 1317 aa13.1□□□□□ -0.31
PTCD2P1-201ENST00000554393 ECM29Q5VYK3 1845 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 EGFRP00533 1210 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 USP17L8P0C7I0 530 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 DEFB115Q30KQ5 88 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 CST9Q5W186 159 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 ARAP2Q8WZ64 1704 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 GLIS2Q9BZE0 524 aaPredicted RBP13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 API5Q9BZZ5 524 aaKnown RBP13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 USP44Q9H0E7 712 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 BICC1Q9H694 974 aaKnown RBP13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 CNNM1Q9NRU3 951 aa13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 ABT1Q9ULW3 272 aaKnown RBP13.09□□□□□ -0.31
PTCD2P1-201ENST00000554393 TAF5LO75529 589 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 KLRK1P26718 216 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 VEGFBP49765 207 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 LBX1P52954 281 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 RARSP54136 660 aaKnown RBP13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 FMR1Q06787 632 aaKnown RBP eCLIP13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 ANKRD44Q8N8A2 993 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 SPOCK2Q92563 424 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 ARHGAP45Q92619 1136 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 DCPSQ96C86 337 aaKnown RBP13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 ZNF594Q96JF6 807 aaPredicted RBP13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 TLL2Q9Y6L7 1015 aa13.08□□□□□ -0.32
PTCD2P1-201ENST00000554393 CELF2O95319 508 aaKnown RBP13.07□□□□□ -0.32
PTCD2P1-201ENST00000554393 KRT26Q7Z3Y9 468 aa13.07□□□□□ -0.32
PTCD2P1-201ENST00000554393 ZNF804AQ7Z570 1209 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms