RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 C15orf52Q6ZUT6 534 aaKnown RBP17.72■□□□□ 0.43
SHMT2-210ENST00000553950 HELBQ8NG08 1087 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-210ENST00000553950 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.72■□□□□ 0.43
SHMT2-210ENST00000553950 XAGE2Q96GT9 111 aa17.72■□□□□ 0.43
SHMT2-210ENST00000553950 CCDC8Q9H0W5 538 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-210ENST00000553950 BCL11AQ9H165 835 aa17.72■□□□□ 0.43
SHMT2-210ENST00000553950 GNL3LQ9NVN8 582 aaKnown RBP17.72■□□□□ 0.43
SHMT2-210ENST00000553950 NSFL1CQ9UNZ2 370 aaKnown RBP17.72■□□□□ 0.43
SHMT2-210ENST00000553950 SNED1Q8TER0 1413 aa17.72■□□□□ 0.43
SHMT2-210ENST00000553950 AKAP11Q9UKA4 1901 aa17.71■□□□□ 0.43
SHMT2-210ENST00000553950 ZBTB22O15209 634 aa17.71■□□□□ 0.43
SHMT2-210ENST00000553950 KCNA3P22001 575 aa17.71■□□□□ 0.43
SHMT2-210ENST00000553950 GPSM2P81274 684 aa17.71■□□□□ 0.43
SHMT2-210ENST00000553950 TTC39AQ5SRH9 613 aa17.71■□□□□ 0.43
SHMT2-210ENST00000553950 ZNF512BQ96KM6 892 aaPredicted RBP17.71■□□□□ 0.43
SHMT2-210ENST00000553950 DBNDD2Q9BQY9 259 aa17.71■□□□□ 0.43
SHMT2-210ENST00000553950 ATP5JP18859 108 aa17.7■□□□□ 0.42
SHMT2-210ENST00000553950 BMP2KLQ5H9B9 411 aa17.7■□□□□ 0.42
SHMT2-210ENST00000553950 ZNF804AQ7Z570 1209 aa17.7■□□□□ 0.42
SHMT2-210ENST00000553950 VPS37DQ86XT2 251 aa17.7■□□□□ 0.42
SHMT2-210ENST00000553950 FHDC1Q9C0D6 1143 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-210ENST00000553950 TLR7Q9NYK1 1049 aaKnown RBP17.7■□□□□ 0.42
SHMT2-210ENST00000553950 MAST2Q6P0Q8 1798 aa17.7■□□□□ 0.42
SHMT2-210ENST00000553950 DOCK2Q92608 1830 aa17.7■□□□□ 0.42
SHMT2-210ENST00000553950 SEMA3EO15041 775 aa17.69■□□□□ 0.42
SHMT2-210ENST00000553950 TIMM10P62072 90 aa17.69■□□□□ 0.42
SHMT2-210ENST00000553950 TTC22Q5TAA0 569 aa17.69■□□□□ 0.42
SHMT2-210ENST00000553950 C16orf71Q8IYS4 520 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-210ENST00000553950 TBC1D16Q8TBP0 767 aa17.69■□□□□ 0.42
SHMT2-210ENST00000553950 C7orf43Q8WVR3 580 aa17.69■□□□□ 0.42
SHMT2-210ENST00000553950 PSMD1Q99460 953 aa17.69■□□□□ 0.42
SHMT2-210ENST00000553950 RTFDC1Q9BY42 306 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-210ENST00000553950 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-210ENST00000553950 PSME4Q14997 1843 aa17.69■□□□□ 0.42
SHMT2-210ENST00000553950 CHD4Q14839 1912 aa17.68■□□□□ 0.42
SHMT2-210ENST00000553950 C6orf229H3BNL8 230 aa17.68■□□□□ 0.42
SHMT2-210ENST00000553950 ARID4AP29374 1257 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-210ENST00000553950 CCDC88AQ3V6T2 1871 aa17.68■□□□□ 0.42
SHMT2-210ENST00000553950 PI4K2BQ8TCG2 481 aa17.68■□□□□ 0.42
SHMT2-210ENST00000553950 OTUD7AQ8TE49 926 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-210ENST00000553950 VPS33BQ9H267 617 aa17.68■□□□□ 0.42
SHMT2-210ENST00000553950 PDS5AQ29RF7 1337 aaKnown RBP17.68■□□□□ 0.42
SHMT2-210ENST00000553950 RFX7Q2KHR2 1363 aa17.67■□□□□ 0.42
SHMT2-210ENST00000553950 C21orf2O43822 256 aa17.67■□□□□ 0.42
SHMT2-210ENST00000553950 ADORA1P30542 326 aa17.67■□□□□ 0.42
SHMT2-210ENST00000553950 CCDC102BQ68D86 513 aa17.67■□□□□ 0.42
SHMT2-210ENST00000553950 CNTROBQ8N137 903 aa17.67■□□□□ 0.42
SHMT2-210ENST00000553950 HIBADHP31937 336 aaKnown RBP17.66■□□□□ 0.42
SHMT2-210ENST00000553950 TICAM2Q86XR7 235 aa17.66■□□□□ 0.42
SHMT2-210ENST00000553950 NLGN2Q8NFZ4 835 aa17.66■□□□□ 0.42
SHMT2-210ENST00000553950 ZC3H12CQ9C0D7 883 aaKnown RBP17.66■□□□□ 0.42
SHMT2-210ENST00000553950 BCS1LQ9Y276 419 aa17.66■□□□□ 0.42
SHMT2-210ENST00000553950 LTBP3Q9NS15 1303 aa17.66■□□□□ 0.42
SHMT2-210ENST00000553950 DICER1Q9UPY3 1922 aaKnown RBP17.65■□□□□ 0.42
SHMT2-210ENST00000553950 IGSF3O75054 1194 aa17.65■□□□□ 0.42
SHMT2-210ENST00000553950 FKBP4Q02790 459 aaKnown RBP eCLIP17.65■□□□□ 0.42
SHMT2-210ENST00000553950 LRRFIP1Q32MZ4 808 aaKnown RBP17.65■□□□□ 0.42
SHMT2-210ENST00000553950 HAUS7Q99871 368 aa17.65■□□□□ 0.42
SHMT2-210ENST00000553950 SYT17Q9BSW7 474 aa17.65■□□□□ 0.42
SHMT2-210ENST00000553950 DENND2AQ9ULE3 1009 aa17.65■□□□□ 0.42
SHMT2-210ENST00000553950 IRS2Q9Y4H2 1338 aa17.65■□□□□ 0.42
SHMT2-210ENST00000553950 EIF5BO60841 1220 aaKnown RBP17.64■□□□□ 0.41
SHMT2-210ENST00000553950 PHKA1P46020 1223 aa17.64■□□□□ 0.41
SHMT2-210ENST00000553950 TTF1Q15361 905 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-210ENST00000553950 WASHC4Q2M389 1173 aa17.64■□□□□ 0.41
SHMT2-210ENST00000553950 FBXO33Q7Z6M2 555 aa17.64■□□□□ 0.41
SHMT2-210ENST00000553950 COA1Q9GZY4 146 aa17.64■□□□□ 0.41
SHMT2-210ENST00000553950 TAOK3Q9H2K8 898 aa17.64■□□□□ 0.41
SHMT2-210ENST00000553950 POLLQ9UGP5 575 aa17.64■□□□□ 0.41
SHMT2-210ENST00000553950 G3V3G9 751 aa17.63■□□□□ 0.41
SHMT2-210ENST00000553950 FRAT2O75474 233 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-210ENST00000553950 DCAF8Q5TAQ9 597 aa17.63■□□□□ 0.41
SHMT2-210ENST00000553950 CASC1Q6TDU7 716 aa17.63■□□□□ 0.41
SHMT2-210ENST00000553950 EVI5LQ96CN4 794 aa17.63■□□□□ 0.41
SHMT2-210ENST00000553950 FAM84BQ96KN1 310 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-210ENST00000553950 ZNF219Q9P2Y4 722 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-210ENST00000553950 TRIM6-TRIM34B2RNG4 842 aa17.62■□□□□ 0.41
SHMT2-210ENST00000553950 SNAP23O00161 211 aa17.62■□□□□ 0.41
SHMT2-210ENST00000553950 GYG1P46976 350 aa17.62■□□□□ 0.41
SHMT2-210ENST00000553950 KIAA2012Q0VF49 1180 aa17.62■□□□□ 0.41
SHMT2-210ENST00000553950 TSHZ3Q63HK5 1081 aa17.62■□□□□ 0.41
SHMT2-210ENST00000553950 SKAP1Q86WV1 359 aa17.62■□□□□ 0.41
SHMT2-210ENST00000553950 ZGPATQ8N5A5 531 aaKnown RBP17.62■□□□□ 0.41
SHMT2-210ENST00000553950 BOLA2Q9H3K6 86 aa17.62■□□□□ 0.41
SHMT2-210ENST00000553950 HIP1O00291 1037 aa17.61■□□□□ 0.41
SHMT2-210ENST00000553950 GSPT1P15170 499 aaKnown RBP17.61■□□□□ 0.41
SHMT2-210ENST00000553950 BCAMP50895 628 aa17.61■□□□□ 0.41
SHMT2-210ENST00000553950 TMED8Q6PL24 325 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-210ENST00000553950 SPATA5Q8NB90 893 aa17.61■□□□□ 0.41
SHMT2-210ENST00000553950 DNAJC2Q99543 621 aaKnown RBP17.61■□□□□ 0.41
SHMT2-210ENST00000553950 PAG1Q9NWQ8 432 aa17.61■□□□□ 0.41
SHMT2-210ENST00000553950 PPIP5K2O43314 1243 aa17.6■□□□□ 0.41
SHMT2-210ENST00000553950 IL1R1P14778 569 aa17.6■□□□□ 0.41
SHMT2-210ENST00000553950 KLRK1P26718 216 aa17.6■□□□□ 0.41
SHMT2-210ENST00000553950 MCAMP43121 646 aa17.6■□□□□ 0.41
SHMT2-210ENST00000553950 RASGRF1Q13972 1273 aa17.6■□□□□ 0.41
SHMT2-210ENST00000553950 OLFM4Q6UX06 510 aa17.6■□□□□ 0.41
SHMT2-210ENST00000553950 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.6■□□□□ 0.411e-6■■□□□ 11.9
SHMT2-210ENST00000553950 TIAM2Q8IVF5 1701 aa17.6■□□□□ 0.41
SHMT2-210ENST00000553950 ZNF646O15015 1829 aaPredicted RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms