RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 OGFOD1Q8N543 542 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 FBXW7Q969H0 707 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 COA1Q9GZY4 146 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 GBA2Q9HCG7 927 aaPredicted RBP16.19■□□□□ 0.18
LINC00643-202ENST00000553426 GGA3Q9NZ52 723 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 CHMP3Q9Y3E7 222 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 ZNF609O15014 1411 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 ZNF804BA4D1E1 1349 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 MYO3BQ8WXR4 1341 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 F6X3S4 739 aa16.18■□□□□ 0.18
LINC00643-202ENST00000553426 CA12O43570 354 aa16.18■□□□□ 0.18
LINC00643-202ENST00000553426 AOC2O75106 756 aa16.18■□□□□ 0.18
LINC00643-202ENST00000553426 NOGQ13253 232 aa16.18■□□□□ 0.18
LINC00643-202ENST00000553426 IFIT5Q13325 482 aaKnown RBP16.18■□□□□ 0.18
LINC00643-202ENST00000553426 SCARF1Q14162 830 aa16.18■□□□□ 0.18
LINC00643-202ENST00000553426 MYOZ2Q9NPC6 264 aa16.18■□□□□ 0.18
LINC00643-202ENST00000553426 SPINK5Q9NQ38 1064 aaPredicted RBP16.18■□□□□ 0.18
LINC00643-202ENST00000553426 C9orf78Q9NZ63 289 aaPredicted RBP16.18■□□□□ 0.18
LINC00643-202ENST00000553426 SCN9AQ15858 1988 aa16.17■□□□□ 0.18
LINC00643-202ENST00000553426 ADM5C9JUS6 153 aa16.17■□□□□ 0.18
LINC00643-202ENST00000553426 MMP14P50281 582 aa16.17■□□□□ 0.18
LINC00643-202ENST00000553426 BEND3Q5T5X7 828 aa16.17■□□□□ 0.18
LINC00643-202ENST00000553426 STRIP1Q5VSL9 837 aa16.17■□□□□ 0.18
LINC00643-202ENST00000553426 BRPF1P55201 1214 aaPredicted RBP16.16■□□□□ 0.18
LINC00643-202ENST00000553426 CHRNDQ07001 517 aa16.16■□□□□ 0.18
LINC00643-202ENST00000553426 TAF7LQ5H9L4 462 aa16.16■□□□□ 0.18
LINC00643-202ENST00000553426 ANGEL2Q5VTE6 544 aaKnown RBP16.16■□□□□ 0.18
LINC00643-202ENST00000553426 CCDC102AQ96A19 550 aa16.16■□□□□ 0.18
LINC00643-202ENST00000553426 GMLQ99445 158 aa16.16■□□□□ 0.18
LINC00643-202ENST00000553426 THSD7BQ9C0I4 1608 aa16.16■□□□□ 0.18
LINC00643-202ENST00000553426 WTIPA6NIX2 430 aaPredicted RBP16.15■□□□□ 0.18
LINC00643-202ENST00000553426 GRM8O00222 908 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 ALDH1L1O75891 902 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 CCDC57Q2TAC2 916 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 TTLL5Q6EMB2 1281 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 RGMBQ6NW40 437 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 SLC4A10Q6U841 1118 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 DLK2Q6UY11 383 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 HDAC9Q9UKV0 1011 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 PITPNM2Q9BZ72 1349 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 SPEF2Q9C093 1822 aa16.15■□□□□ 0.18
LINC00643-202ENST00000553426 DACT2Q5SW24 774 aa16.14■□□□□ 0.17
LINC00643-202ENST00000553426 SRCIN1Q9C0H9 1055 aa16.14■□□□□ 0.17
LINC00643-202ENST00000553426 CCDC85CA6NKD9 419 aa16.13■□□□□ 0.17
LINC00643-202ENST00000553426 ZNF157P51786 506 aaPredicted RBP16.13■□□□□ 0.17
LINC00643-202ENST00000553426 FOXO4P98177 505 aa16.13■□□□□ 0.17
LINC00643-202ENST00000553426 LMBR1LQ6UX01 489 aa16.13■□□□□ 0.17
LINC00643-202ENST00000553426 TXNRD3Q86VQ6 643 aa16.13■□□□□ 0.17
LINC00643-202ENST00000553426 CDCA5Q96FF9 252 aa16.13■□□□□ 0.17
LINC00643-202ENST00000553426 ASTN2O75129 1339 aaPredicted RBP16.13■□□□□ 0.17
LINC00643-202ENST00000553426 PSME4Q14997 1843 aa16.12■□□□□ 0.17
LINC00643-202ENST00000553426 FKBP1BP68106 108 aa16.12■□□□□ 0.17
LINC00643-202ENST00000553426 LDHAL6AQ6ZMR3 332 aa16.12■□□□□ 0.17
LINC00643-202ENST00000553426 ZNF804AQ7Z570 1209 aa16.12■□□□□ 0.17
LINC00643-202ENST00000553426 CNNM1Q9NRU3 951 aa16.12■□□□□ 0.17
LINC00643-202ENST00000553426 TSKSQ9UJT2 592 aa16.12■□□□□ 0.17
LINC00643-202ENST00000553426 POLR2AP24928 1970 aaKnown RBP16.12■□□□□ 0.17
LINC00643-202ENST00000553426 E9PSI1 815 aa16.11■□□□□ 0.17
LINC00643-202ENST00000553426 TAF5LO75529 589 aa16.11■□□□□ 0.17
LINC00643-202ENST00000553426 NF2P35240 595 aa16.11■□□□□ 0.17
LINC00643-202ENST00000553426 RGS19P49795 217 aa16.11■□□□□ 0.17
LINC00643-202ENST00000553426 GTF2IP78347 998 aa16.11■□□□□ 0.17
LINC00643-202ENST00000553426 MXD3Q9BW11 206 aa16.11■□□□□ 0.17
LINC00643-202ENST00000553426 CD209Q9NNX6 404 aa16.11■□□□□ 0.17
LINC00643-202ENST00000553426 KLRK1P26718 216 aa16.1■□□□□ 0.17
LINC00643-202ENST00000553426 MLLT1Q03111 559 aaPredicted RBP16.1■□□□□ 0.17
LINC00643-202ENST00000553426 NBPF9Q3BBW0 867 aa16.1■□□□□ 0.17
LINC00643-202ENST00000553426 KIAA0825Q8IV33 1275 aa16.1■□□□□ 0.17
LINC00643-202ENST00000553426 HELBQ8NG08 1087 aaPredicted RBP16.1■□□□□ 0.17
LINC00643-202ENST00000553426 ZNF521Q96K83 1311 aa16.1■□□□□ 0.17
LINC00643-202ENST00000553426 WNT10BO00744 389 aa16.09■□□□□ 0.17
LINC00643-202ENST00000553426 PLIN1O60240 522 aa16.09■□□□□ 0.17
LINC00643-202ENST00000553426 TTLL12Q14166 644 aaPredicted RBP16.09■□□□□ 0.17
LINC00643-202ENST00000553426 C15orf52Q6ZUT6 534 aaKnown RBP16.09■□□□□ 0.17
LINC00643-202ENST00000553426 FAM155AB1AL88 458 aaPredicted RBP16.08■□□□□ 0.16
LINC00643-202ENST00000553426 EPHA10Q5JZY3 1008 aa16.08■□□□□ 0.16
LINC00643-202ENST00000553426 APOBEC3FQ8IUX4 373 aaKnown RBP16.08■□□□□ 0.16
LINC00643-202ENST00000553426 REM2Q8IYK8 340 aaPredicted RBP16.08■□□□□ 0.16
LINC00643-202ENST00000553426 ZNF594Q96JF6 807 aaPredicted RBP16.08■□□□□ 0.16
LINC00643-202ENST00000553426 PTPRCP08575 1304 aa16.08■□□□□ 0.16
LINC00643-202ENST00000553426 TNRC18O15417 2968 aaPredicted RBP16.07■□□□□ 0.16
LINC00643-202ENST00000553426 SASH1O94885 1247 aa16.07■□□□□ 0.16
LINC00643-202ENST00000553426 KIF23Q02241 960 aaPredicted RBP16.07■□□□□ 0.16
LINC00643-202ENST00000553426 ZIC5Q96T25 663 aa16.07■□□□□ 0.16
LINC00643-202ENST00000553426 CASP8AP2Q9UKL3 1982 aa16.06■□□□□ 0.16
LINC00643-202ENST00000553426 SNAP23O00161 211 aa16.06■□□□□ 0.16
LINC00643-202ENST00000553426 MYO1BO43795 1136 aa16.06■□□□□ 0.16
LINC00643-202ENST00000553426 SLC10A3P09131 477 aa16.06■□□□□ 0.16
LINC00643-202ENST00000553426 IL1R1P14778 569 aa16.06■□□□□ 0.16
LINC00643-202ENST00000553426 DLGAP5Q15398 846 aa16.06■□□□□ 0.16
LINC00643-202ENST00000553426 MRPL50Q8N5N7 158 aaKnown RBP16.06■□□□□ 0.16
LINC00643-202ENST00000553426 SAGE1Q9NXZ1 904 aa16.06■□□□□ 0.16
LINC00643-202ENST00000553426 NBPF7P0C2Y1 421 aaPredicted RBP16.05■□□□□ 0.16
LINC00643-202ENST00000553426 UBE4AQ14139 1066 aa16.05■□□□□ 0.16
LINC00643-202ENST00000553426 SUCLG2Q96I99 432 aa16.05■□□□□ 0.16
LINC00643-202ENST00000553426 SCAF8Q9UPN6 1271 aaKnown RBP16.05■□□□□ 0.16
LINC00643-202ENST00000553426 UTYO14607 1347 aa16.04■□□□□ 0.16
LINC00643-202ENST00000553426 MROH5Q6ZUA9 1318 aa16.04■□□□□ 0.16
LINC00643-202ENST00000553426 FKBP1AP62942 108 aaKnown RBP16.04■□□□□ 0.16
LINC00643-202ENST00000553426 PRAMEF18Q5VWM3 479 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms