RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 FBXO33Q7Z6M2 555 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 AACSQ86V21 672 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 RTKN2Q8IZC4 609 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 MPNDQ8N594 471 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 PI4K2BQ8TCG2 481 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 XAGE2Q96GT9 111 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 PSMD1Q99460 953 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 SYT17Q9BSW7 474 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 MYH13Q9UKX3 1938 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 LTBP3Q9NS15 1303 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 MED23Q9ULK4 1368 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 PSME4Q14997 1843 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 CHD4Q14839 1912 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 TAF5LO75529 589 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 ARID4AP29374 1257 aaPredicted RBP11.74□□□□□ -0.53
LIMA1-211ENST00000552338 DALRD3Q5D0E6 543 aaKnown RBP11.74□□□□□ -0.53
LIMA1-211ENST00000552338 HELBQ8NG08 1087 aaPredicted RBP11.74□□□□□ -0.53
LIMA1-211ENST00000552338 TBC1D16Q8TBP0 767 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 DBNDD2Q9BQY9 259 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 FHDC1Q9C0D6 1143 aaPredicted RBP11.74□□□□□ -0.53
LIMA1-211ENST00000552338 ECHDC1Q9NTX5 307 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 POLLQ9UGP5 575 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 GGA1Q9UJY5 639 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 PDS5AQ29RF7 1337 aaKnown RBP11.74□□□□□ -0.53
LIMA1-211ENST00000552338 AK9Q5TCS8 1911 aa11.74□□□□□ -0.53
LIMA1-211ENST00000552338 DICER1Q9UPY3 1922 aaKnown RBP11.74□□□□□ -0.53
LIMA1-211ENST00000552338 APBB1O00213 710 aa11.73□□□□□ -0.53
LIMA1-211ENST00000552338 SEMA3EO15041 775 aa11.73□□□□□ -0.53
LIMA1-211ENST00000552338 ERC2O15083 957 aa11.73□□□□□ -0.53
LIMA1-211ENST00000552338 GLRX3O76003 335 aaKnown RBP11.73□□□□□ -0.53
LIMA1-211ENST00000552338 SBF1O95248 1867 aa11.73□□□□□ -0.53
LIMA1-211ENST00000552338 CCDC93Q567U6 631 aa11.73□□□□□ -0.53
LIMA1-211ENST00000552338 SUPT20HQ8NEM7 779 aa11.73□□□□□ -0.53
LIMA1-211ENST00000552338 OTUD7AQ8TE49 926 aaPredicted RBP11.73□□□□□ -0.53
LIMA1-211ENST00000552338 FAM84BQ96KN1 310 aaPredicted RBP11.73□□□□□ -0.53
LIMA1-211ENST00000552338 CCDC8Q9H0W5 538 aaPredicted RBP11.73□□□□□ -0.53
LIMA1-211ENST00000552338 TMX4Q9H1E5 349 aaPredicted RBP11.73□□□□□ -0.53
LIMA1-211ENST00000552338 NSFL1CQ9UNZ2 370 aaKnown RBP11.73□□□□□ -0.53
LIMA1-211ENST00000552338 ZNF646O15015 1829 aaPredicted RBP11.72□□□□□ -0.53
LIMA1-211ENST00000552338 DOCK2Q92608 1830 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 UQCRFS1P1P0C7P4 283 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 IL1R1P14778 569 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 BMP2KLQ5H9B9 411 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 CCDC158Q5M9N0 1113 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 CCDC102BQ68D86 513 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 NLGN2Q8NFZ4 835 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 GPATCH3Q96I76 525 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 TLR7Q9NYK1 1049 aaKnown RBP11.72□□□□□ -0.53
LIMA1-211ENST00000552338 ANKIB1Q9P2G1 1089 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 CCDC88AQ3V6T2 1871 aa11.72□□□□□ -0.53
LIMA1-211ENST00000552338 MYH7P12883 1935 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 WTIPA6NIX2 430 aaPredicted RBP11.71□□□□□ -0.53
LIMA1-211ENST00000552338 SNAP23O00161 211 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 C21orf2O43822 256 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 FKBP4Q02790 459 aaKnown RBP eCLIP11.71□□□□□ -0.53
LIMA1-211ENST00000552338 CAVIN4Q5BKX8 364 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 TTC22Q5TAA0 569 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 DPP8Q6V1X1 898 aaPredicted RBP11.71□□□□□ -0.53
LIMA1-211ENST00000552338 TXNRD3Q86VQ6 643 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 TDRD7Q8NHU6 1098 aaKnown RBP11.71□□□□□ -0.53
LIMA1-211ENST00000552338 NEUROD6Q96NK8 337 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 EYA3Q99504 573 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 HAUS7Q99871 368 aa11.71□□□□□ -0.53
LIMA1-211ENST00000552338 ADORA1P30542 326 aa11.7□□□□□ -0.54
LIMA1-211ENST00000552338 HIBADHP31937 336 aaKnown RBP11.7□□□□□ -0.54
LIMA1-211ENST00000552338 KIAA2012Q0VF49 1180 aa11.7□□□□□ -0.54
LIMA1-211ENST00000552338 TMED8Q6PL24 325 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-211ENST00000552338 SLC51AQ86UW1 340 aa11.7□□□□□ -0.54
LIMA1-211ENST00000552338 COA1Q9GZY4 146 aa11.7□□□□□ -0.54
LIMA1-211ENST00000552338 MYO5AQ9Y4I1 1855 aaKnown RBP11.7□□□□□ -0.54
LIMA1-211ENST00000552338 SALL1Q9NSC2 1324 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 UFL1O94874 794 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 GSPT1P15170 499 aaKnown RBP11.69□□□□□ -0.54
LIMA1-211ENST00000552338 PHKA1P46020 1223 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 KCNJ4P48050 445 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 BCAMP50895 628 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 WASHC4Q2M389 1173 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 OLFM4Q6UX06 510 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 PODNQ7Z5L7 613 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 ZC3H12CQ9C0D7 883 aaKnown RBP11.69□□□□□ -0.54
LIMA1-211ENST00000552338 CD209Q9NNX6 404 aa11.69□□□□□ -0.54
LIMA1-211ENST00000552338 RFX7Q2KHR2 1363 aa11.68□□□□□ -0.54
LIMA1-211ENST00000552338 FAM205AQ6ZU69 1335 aa11.68□□□□□ -0.54
LIMA1-211ENST00000552338 MCAMP43121 646 aa11.68□□□□□ -0.54
LIMA1-211ENST00000552338 FKBP1AP62942 108 aaKnown RBP11.68□□□□□ -0.54
LIMA1-211ENST00000552338 ZNF804AQ7Z570 1209 aa11.68□□□□□ -0.54
LIMA1-211ENST00000552338 SKAP1Q86WV1 359 aa11.68□□□□□ -0.54
LIMA1-211ENST00000552338 GNL3LQ9NVN8 582 aaKnown RBP11.68□□□□□ -0.54
LIMA1-211ENST00000552338 PPP1R1BQ9UD71 204 aaPredicted RBP11.68□□□□□ -0.54
LIMA1-211ENST00000552338 DENND2AQ9ULE3 1009 aa11.68□□□□□ -0.54
LIMA1-211ENST00000552338 SCN9AQ15858 1988 aa11.68□□□□□ -0.54
LIMA1-211ENST00000552338 C6orf229H3BNL8 230 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 NFKBIEO00221 500 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 KLRK1P26718 216 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 GYG1P46976 350 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 RGS3P49796 1198 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 TTC39AQ5SRH9 613 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 GORABQ5T7V8 394 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 EVI5LQ96CN4 794 aa11.67□□□□□ -0.54
LIMA1-211ENST00000552338 HMG20BQ9P0W2 317 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms