RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 MSMPQ1L6U9 139 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 ZNF648Q5T619 568 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-207ENST00000551486 TTC39BQ5VTQ0 682 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-207ENST00000551486 PAOXQ6QHF9 649 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 TREML1Q86YW5 311 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 KSR1Q8IVT5 923 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 UBASH3BQ8TF42 649 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 WNT8BQ93098 351 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 BCANQ96GW7 911 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 MYO19Q96H55 970 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 FAM13BQ9NYF5 915 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 USP20Q9Y2K6 914 aa3.96□□□□□ -1.78
LIMA1-207ENST00000551486 DKK1O94907 266 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 F13BP05160 661 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 USP11P51784 963 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 PIP4K2BP78356 416 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 MCM6Q14566 821 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 NFKBIBQ15653 356 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 ZNF124Q15973 351 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 KRTAP19-4Q3LI73 84 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 HDGFL1Q5TGJ6 251 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 KLHDC7BQ96G42 594 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 YIPF2Q9BWQ6 316 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 OSGEPQ9NPF4 335 aa3.95□□□□□ -1.78
LIMA1-207ENST00000551486 FNDC3AQ9Y2H6 1198 aaKnown RBP3.95□□□□□ -1.78
LIMA1-207ENST00000551486 FAM95CA0A1B0GW59 222 aa3.94□□□□□ -1.78
LIMA1-207ENST00000551486 DDX3YO15523 660 aaKnown RBP3.94□□□□□ -1.78
LIMA1-207ENST00000551486 DUSP27Q5VZP5 1158 aa3.94□□□□□ -1.78
LIMA1-207ENST00000551486 NUTM2GQ5VZR2 741 aa3.94□□□□□ -1.78
LIMA1-207ENST00000551486 C12orf50Q8NA57 414 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-207ENST00000551486 OR13H1Q8NG92 308 aa3.94□□□□□ -1.78
LIMA1-207ENST00000551486 FOXD4L4Q8WXT5 416 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-207ENST00000551486 PIK3R5Q8WYR1 880 aa3.94□□□□□ -1.78
LIMA1-207ENST00000551486 QTRT2Q9H974 415 aaKnown RBP3.94□□□□□ -1.78
LIMA1-207ENST00000551486 KCNMB2Q9Y691 235 aa3.94□□□□□ -1.78
LIMA1-207ENST00000551486 MEGF11A6BM72 1044 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 UBAP1LF5GYI3 381 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 H3BRJ5 948 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 ADAM11O75078 769 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 ATP11AP98196 1134 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 CYP27A1Q02318 531 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 DPYDQ12882 1025 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 SGO2Q562F6 1265 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 SPOCD1Q6ZMY3 1216 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 NCAPG2Q86XI2 1143 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 PBX4Q9BYU1 374 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 RASSF4Q9H2L5 321 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 CYP4F12Q9HCS2 524 aa3.93□□□□□ -1.78
LIMA1-207ENST00000551486 SH2B1Q9NRF2 756 aaPredicted RBP3.93□□□□□ -1.78
LIMA1-207ENST00000551486 LGR5O75473 907 aa3.92□□□□□ -1.78
LIMA1-207ENST00000551486 EPHA1P21709 976 aa3.92□□□□□ -1.78
LIMA1-207ENST00000551486 NLRP12P59046 1061 aa3.92□□□□□ -1.78
LIMA1-207ENST00000551486 TBC1D32Q96NH3 1257 aa3.92□□□□□ -1.78
LIMA1-207ENST00000551486 ADAM19Q9H013 955 aa3.92□□□□□ -1.78
LIMA1-207ENST00000551486 PAPLNO95428 1278 aa3.91□□□□□ -1.78
LIMA1-207ENST00000551486 BRD2P25440 801 aaKnown RBP3.91□□□□□ -1.78
LIMA1-207ENST00000551486 PLCL1Q15111 1095 aa3.91□□□□□ -1.78
LIMA1-207ENST00000551486 ANKMY2Q8IV38 441 aa3.91□□□□□ -1.78
LIMA1-207ENST00000551486 STK11IPQ8N1F8 1099 aa3.91□□□□□ -1.78
LIMA1-207ENST00000551486 SLC7A3Q8WY07 619 aa3.91□□□□□ -1.78
LIMA1-207ENST00000551486 UCN2Q96RP3 112 aa3.91□□□□□ -1.78
LIMA1-207ENST00000551486 PAK6Q9NQU5 681 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-207ENST00000551486 SLC5A6Q9Y289 635 aa3.91□□□□□ -1.78
LIMA1-207ENST00000551486 TM4SF5O14894 197 aa3.9□□□□□ -1.79
LIMA1-207ENST00000551486 EIF4EBP3O60516 100 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-207ENST00000551486 WEE1P30291 646 aa3.9□□□□□ -1.79
LIMA1-207ENST00000551486 C19orf57Q0VDD7 668 aa3.9□□□□□ -1.79
LIMA1-207ENST00000551486 ZAR1Q86SH2 424 aa3.9□□□□□ -1.79
LIMA1-207ENST00000551486 ATG4DQ86TL0 474 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-207ENST00000551486 SMG8Q8ND04 991 aaKnown RBP3.9□□□□□ -1.79
LIMA1-207ENST00000551486 TMEM40Q8WWA1 233 aa3.9□□□□□ -1.79
LIMA1-207ENST00000551486 LRRC4CQ9HCJ2 640 aa3.9□□□□□ -1.79
LIMA1-207ENST00000551486 LRFN2Q9ULH4 789 aa3.9□□□□□ -1.79
LIMA1-207ENST00000551486 A6NJR5 290 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 POM121CA8CG34 1229 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 KIF4AO95239 1232 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 PTK7Q13308 1070 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 COL19A1Q14993 1142 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 COL13A1Q5TAT6 717 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-207ENST00000551486 NFXL1Q6ZNB6 911 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 BHLHE22Q8NFJ8 381 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-207ENST00000551486 ZSCAN18Q8TBC5 510 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-207ENST00000551486 ADAMTS19Q8TE59 1207 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 FBLIM1Q8WUP2 373 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 FAM168AQ92567 244 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 COL26A1Q96A83 441 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 FAM84AQ96KN4 292 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 TOX2Q96NM4 488 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 POP1Q99575 1024 aaKnown RBP3.89□□□□□ -1.79
LIMA1-207ENST00000551486 SUGCTQ9HAC7 445 aa3.89□□□□□ -1.79
LIMA1-207ENST00000551486 ABI2Q9NYB9 513 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-207ENST00000551486 TFIP11Q9UBB9 837 aaKnown RBP3.89□□□□□ -1.79
LIMA1-207ENST00000551486 FAM196BA6NMK8 535 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 MAP7Q14244 749 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 TRIP4Q15650 581 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-207ENST00000551486 TMEM132AQ24JP5 1023 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 ZNF792Q3KQV3 632 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 COX20Q5RI15 118 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 LILRA6Q6PI73 481 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 CEP120Q8N960 986 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms