RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 FZD9O00144 591 aa8.89□□□□□ -0.99
LIMA1-204ENST00000549064 NPHP1O15259 732 aa8.89□□□□□ -0.99
LIMA1-204ENST00000549064 MAP2K2P36507 400 aa8.89□□□□□ -0.99
LIMA1-204ENST00000549064 IARSP41252 1262 aaKnown RBP8.89□□□□□ -0.99
LIMA1-204ENST00000549064 EPS15P42566 896 aa8.89□□□□□ -0.99
LIMA1-204ENST00000549064 SULT6B1Q6IMI4 303 aa8.89□□□□□ -0.99
LIMA1-204ENST00000549064 EPS8L1Q8TE68 723 aa8.89□□□□□ -0.99
LIMA1-204ENST00000549064 GJA3Q9Y6H8 435 aa8.89□□□□□ -0.99
LIMA1-204ENST00000549064 A0A087WZG4 1122 aa8.88□□□□□ -0.99
LIMA1-204ENST00000549064 RNMTO43148 476 aaKnown RBP8.88□□□□□ -0.99
LIMA1-204ENST00000549064 ST5P78524 1137 aa8.88□□□□□ -0.99
LIMA1-204ENST00000549064 CIAPIN1Q6FI81 312 aa8.88□□□□□ -0.99
LIMA1-204ENST00000549064 GPC2Q8N158 579 aa8.88□□□□□ -0.99
LIMA1-204ENST00000549064 SYNE4Q8N205 404 aa8.88□□□□□ -0.99
LIMA1-204ENST00000549064 ZIC5Q96T25 663 aa8.88□□□□□ -0.99
LIMA1-204ENST00000549064 ZBED2Q9BTP6 218 aa8.88□□□□□ -0.99
LIMA1-204ENST00000549064 SEPT9Q9UHD8 586 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-204ENST00000549064 CARNS1A5YM72 827 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 C6orf229H3BNL8 230 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 CA12O43570 354 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 SCNN1DP51172 638 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 AKAP4Q5JQC9 854 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 SAPCD2Q86UD0 394 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 SETDB2Q96T68 719 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 PPP1R12CQ9BZL4 782 aa8.87□□□□□ -0.99
LIMA1-204ENST00000549064 CAMTA2O94983 1202 aa8.86□□□□□ -0.99
LIMA1-204ENST00000549064 CELF2O95319 508 aaKnown RBP8.86□□□□□ -0.99
LIMA1-204ENST00000549064 LMOD1P29536 600 aaPredicted RBP8.86□□□□□ -0.99
LIMA1-204ENST00000549064 PDE4CQ08493 712 aa8.86□□□□□ -0.99
LIMA1-204ENST00000549064 CDCA8Q53HL2 280 aa8.86□□□□□ -0.99
LIMA1-204ENST00000549064 SYMPKQ92797 1274 aaKnown RBP8.86□□□□□ -0.99
LIMA1-204ENST00000549064 SCUBE2Q9NQ36 999 aa8.86□□□□□ -0.99
LIMA1-204ENST00000549064 SNED1Q8TER0 1413 aa8.86□□□□□ -0.99
LIMA1-204ENST00000549064 PALM3A6NDB9 673 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-204ENST00000549064 STARD3NLO95772 234 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 A1BGP04217 495 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 HOXB1P14653 301 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-204ENST00000549064 NPR1P16066 1061 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 PSEN2P49810 448 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 MFAP1P55081 439 aaKnown RBP8.85□□□□□ -0.99
LIMA1-204ENST00000549064 EIF6P56537 245 aaKnown RBP8.85□□□□□ -0.99
LIMA1-204ENST00000549064 FUT2Q10981 343 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 SLC51AQ86UW1 340 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 RTKN2Q8IZC4 609 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 SP7Q8TDD2 431 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-204ENST00000549064 ZNF496Q96IT1 587 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-204ENST00000549064 GLIS2Q9BZE0 524 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-204ENST00000549064 ALG2Q9H553 416 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 ZNF408Q9H9D4 720 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 MTMR7Q9Y216 660 aa8.85□□□□□ -0.99
LIMA1-204ENST00000549064 SIPA1L3O60292 1781 aaPredicted RBP8.84□□□□□ -0.99
LIMA1-204ENST00000549064 PIP4K2AP48426 406 aaPredicted RBP8.84□□□□□ -0.99
LIMA1-204ENST00000549064 NBPF5PQ86XG9 351 aaPredicted RBP8.84□□□□□ -0.99
LIMA1-204ENST00000549064 RGS22Q8NE09 1264 aa8.84□□□□□ -0.99
LIMA1-204ENST00000549064 JDP2Q8WYK2 163 aa8.84□□□□□ -0.99
LIMA1-204ENST00000549064 HEG1Q9ULI3 1381 aa8.84□□□□□ -0.99
LIMA1-204ENST00000549064 AKAP11Q9UKA4 1901 aa8.84□□□□□ -1
LIMA1-204ENST00000549064 FAM177BA6PVY3 158 aa8.83□□□□□ -1
LIMA1-204ENST00000549064 IL6STP40189 918 aaPredicted RBP8.83□□□□□ -1
LIMA1-204ENST00000549064 POTEHQ6S545 545 aa8.83□□□□□ -1
LIMA1-204ENST00000549064 USP50Q70EL3 339 aaPredicted RBP8.83□□□□□ -1
LIMA1-204ENST00000549064 DZIP3Q86Y13 1208 aaKnown RBP8.83□□□□□ -1
LIMA1-204ENST00000549064 TTC5Q8N0Z6 440 aa8.83□□□□□ -1
LIMA1-204ENST00000549064 UCN2Q96RP3 112 aa8.83□□□□□ -1
LIMA1-204ENST00000549064 POLR3GLQ9BT43 218 aa8.83□□□□□ -1
LIMA1-204ENST00000549064 USTQ9Y2C2 406 aa8.83□□□□□ -1
LIMA1-204ENST00000549064 KLRG2A4D1S0 409 aaPredicted RBP8.82□□□□□ -1
LIMA1-204ENST00000549064 CFHP08603 1231 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 HMOX1P09601 288 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 IL13P35225 146 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 NR6A1Q15406 480 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 MTHFSDQ2M296 383 aaKnown RBP8.82□□□□□ -1
LIMA1-204ENST00000549064 DLK2Q6UY11 383 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 PRR7Q8TB68 274 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 HHIPL1Q96JK4 782 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 PSMD1Q99460 953 aa8.82□□□□□ -1
LIMA1-204ENST00000549064 TFIP11Q9UBB9 837 aaKnown RBP8.82□□□□□ -1
LIMA1-204ENST00000549064 MKI67P46013 3256 aaKnown RBP8.81□□□□□ -1
LIMA1-204ENST00000549064 GRIPAP1Q4V328 841 aa8.81□□□□□ -1
LIMA1-204ENST00000549064 LARGE2Q8N3Y3 721 aa8.81□□□□□ -1
LIMA1-204ENST00000549064 RABGEF1Q9UJ41 708 aa8.81□□□□□ -1
LIMA1-204ENST00000549064 POLR2AP24928 1970 aaKnown RBP8.81□□□□□ -1
LIMA1-204ENST00000549064 PER1O15534 1290 aaPredicted RBP8.8□□□□□ -1
LIMA1-204ENST00000549064 RNF40O75150 1001 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 TRPA1O75762 1119 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 BRD1O95696 1058 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 ALDH1B1P30837 517 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 NOGQ13253 232 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 FOXD4L5Q5VV16 416 aaPredicted RBP8.8□□□□□ -1
LIMA1-204ENST00000549064 ZNF790Q6PG37 636 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 SLF2Q8IX21 1173 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 FOXD4L4Q8WXT5 416 aaPredicted RBP8.8□□□□□ -1
LIMA1-204ENST00000549064 ADARB2Q9NS39 739 aaKnown RBP8.8□□□□□ -1
LIMA1-204ENST00000549064 GPRC5DQ9NZD1 345 aa8.8□□□□□ -1
LIMA1-204ENST00000549064 ABCC12Q96J65 1359 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 PRAMEF22A3QJZ6 481 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 FAM155AB1AL88 458 aaPredicted RBP8.79□□□□□ -1
LIMA1-204ENST00000549064 TCERG1O14776 1098 aaKnown RBP8.79□□□□□ -1
LIMA1-204ENST00000549064 KCNQ3O43525 872 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 SLC4A3P48751 1232 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms