RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 VIL1P09327 827 aaKnown RBP10.88□□□□□ -0.67
USP28-215ENST00000545608 RPS12P25398 132 aaKnown RBP10.88□□□□□ -0.67
USP28-215ENST00000545608 CWF19L2Q2TBE0 894 aaKnown RBP10.88□□□□□ -0.67
USP28-215ENST00000545608 TWISTNBQ3B726 338 aaPredicted RBP10.88□□□□□ -0.67
USP28-215ENST00000545608 ANKRD18AQ8IVF6 992 aa10.88□□□□□ -0.67
USP28-215ENST00000545608 GGA1Q9UJY5 639 aa10.88□□□□□ -0.67
USP28-215ENST00000545608 G3V3G9 751 aa10.87□□□□□ -0.67
USP28-215ENST00000545608 MAP2K2P36507 400 aa10.87□□□□□ -0.67
USP28-215ENST00000545608 CTSWP56202 376 aa10.87□□□□□ -0.67
USP28-215ENST00000545608 PDAP1Q13442 181 aaKnown RBP10.87□□□□□ -0.67
USP28-215ENST00000545608 TTLL11Q8NHH1 800 aa10.87□□□□□ -0.67
USP28-215ENST00000545608 STK31Q9BXU1 1019 aa10.87□□□□□ -0.67
USP28-215ENST00000545608 PCNTO95613 3336 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 NEURL1BA8MQ27 555 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 ADM5C9JUS6 153 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 H7C1W4 665 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 ATP2B4P23634 1241 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 NEXNQ0ZGT2 675 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 KRT26Q7Z3Y9 468 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 HHIPL1Q96JK4 782 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 GREM2Q9H772 168 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 TSKSQ9UJT2 592 aa10.86□□□□□ -0.67
USP28-215ENST00000545608 SALL2Q9Y467 1007 aaPredicted RBP10.86□□□□□ -0.67
USP28-215ENST00000545608 ASTN2O75129 1339 aaPredicted RBP10.85□□□□□ -0.67
USP28-215ENST00000545608 XDHP47989 1333 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 IL16Q14005 1332 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 KIF4BQ2VIQ3 1234 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 RSBN1LQ6PCB5 846 aaPredicted RBP10.85□□□□□ -0.67
USP28-215ENST00000545608 DCPSQ96C86 337 aaKnown RBP10.85□□□□□ -0.67
USP28-215ENST00000545608 ZIC5Q96T25 663 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 CDC5LQ99459 802 aaKnown RBP10.85□□□□□ -0.67
USP28-215ENST00000545608 BEGAINQ9BUH8 593 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 MRS2Q9HD23 443 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 BSDC1Q9NW68 430 aaPredicted RBP10.85□□□□□ -0.67
USP28-215ENST00000545608 MINPP1Q9UNW1 487 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 TRPM7Q96QT4 1865 aa10.85□□□□□ -0.67
USP28-215ENST00000545608 VAMP4O75379 141 aa10.84□□□□□ -0.67
USP28-215ENST00000545608 HUNKP57058 714 aa10.84□□□□□ -0.67
USP28-215ENST00000545608 ZNF280AP59817 542 aaPredicted RBP10.84□□□□□ -0.67
USP28-215ENST00000545608 FLIIQ13045 1269 aa10.84□□□□□ -0.67
USP28-215ENST00000545608 UBE3BQ7Z3V4 1068 aa10.84□□□□□ -0.67
USP28-215ENST00000545608 AGBL3Q8NEM8 1001 aa10.84□□□□□ -0.67
USP28-215ENST00000545608 GMLQ99445 158 aa10.84□□□□□ -0.67
USP28-215ENST00000545608 GBA2Q9HCG7 927 aaPredicted RBP10.84□□□□□ -0.67
USP28-215ENST00000545608 FANCIQ9NVI1 1328 aa10.84□□□□□ -0.67
USP28-215ENST00000545608 CASP7P55210 303 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 SCARF1Q14162 830 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 GCKRQ14397 625 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 PODNQ7Z5L7 613 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 DNAAF4Q8WXU2 420 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 GGA3Q9NZ52 723 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 THSD7BQ9C0I4 1608 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 SCN9AQ15858 1988 aa10.83□□□□□ -0.68
USP28-215ENST00000545608 USP17L3A6NCW0 530 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 USP17L4A6NCW7 530 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 ANP32CO43423 234 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 CSF1RP07333 972 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 USP17L8P0C7I0 530 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 CCT4P50991 539 aaKnown RBP10.82□□□□□ -0.68
USP28-215ENST00000545608 BRPF1P55201 1214 aaPredicted RBP10.82□□□□□ -0.68
USP28-215ENST00000545608 EXOSC9Q06265 439 aaKnown RBP10.82□□□□□ -0.68
USP28-215ENST00000545608 FKBP5Q13451 457 aaPredicted RBP10.82□□□□□ -0.68
USP28-215ENST00000545608 ANGEL2Q5VTE6 544 aaKnown RBP10.82□□□□□ -0.68
USP28-215ENST00000545608 RGMBQ6NW40 437 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 USP17L1Q7RTZ2 530 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 TXNRD3Q86VQ6 643 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 WDR63Q8IWG1 891 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 SULF1Q8IWU6 871 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 C2orf69Q8N8R5 385 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 ABHD8Q96I13 439 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 MXD3Q9BW11 206 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 PLA2G12BQ9BX93 195 aa10.82□□□□□ -0.68
USP28-215ENST00000545608 MED23Q9ULK4 1368 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 ZNF316A6NFI3 1004 aaPredicted RBP10.81□□□□□ -0.68
USP28-215ENST00000545608 FAM155AB1AL88 458 aaPredicted RBP10.81□□□□□ -0.68
USP28-215ENST00000545608 PRKAR2AP13861 404 aaKnown RBP10.81□□□□□ -0.68
USP28-215ENST00000545608 ITGA6P23229 1130 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 IGHMBP2P38935 993 aaKnown RBP10.81□□□□□ -0.68
USP28-215ENST00000545608 NOGQ13253 232 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 FAM161AQ3B820 660 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 LINS1Q8NG48 757 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 CDCA5Q96FF9 252 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 MYOZ2Q9NPC6 264 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 ZNF609O15014 1411 aa10.81□□□□□ -0.68
USP28-215ENST00000545608 F6X3S4 739 aa10.8□□□□□ -0.68
USP28-215ENST00000545608 CA12O43570 354 aa10.8□□□□□ -0.68
USP28-215ENST00000545608 KLRK1P26718 216 aa10.8□□□□□ -0.68
USP28-215ENST00000545608 KIF23Q02241 960 aaPredicted RBP10.8□□□□□ -0.68
USP28-215ENST00000545608 DACT2Q5SW24 774 aa10.8□□□□□ -0.68
USP28-215ENST00000545608 COA1Q9GZY4 146 aa10.8□□□□□ -0.68
USP28-215ENST00000545608 MYH16Q9H6N6 1097 aa10.8□□□□□ -0.68
USP28-215ENST00000545608 SCAF8Q9UPN6 1271 aaKnown RBP10.8□□□□□ -0.68
USP28-215ENST00000545608 LEMD3Q9Y2U8 911 aa10.8□□□□□ -0.68
USP28-215ENST00000545608 ZEB1P37275 1124 aaPredicted RBP10.79□□□□□ -0.68
USP28-215ENST00000545608 ZNF157P51786 506 aaPredicted RBP10.79□□□□□ -0.68
USP28-215ENST00000545608 NBPF9Q3BBW0 867 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 BEND3Q5T5X7 828 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 ZNF579Q8NAF0 562 aaKnown RBP10.79□□□□□ -0.68
USP28-215ENST00000545608 FBXW7Q969H0 707 aa10.79□□□□□ -0.68
USP28-215ENST00000545608 CCDC102AQ96A19 550 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms