RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 CNTROBQ8N137 903 aa14.35□□□□□ -0.11
YBX3-216ENST00000544622 AGBL3Q8NEM8 1001 aa14.35□□□□□ -0.11
YBX3-216ENST00000544622 ZC3H15Q8WU90 426 aaKnown RBP14.35□□□□□ -0.11
YBX3-216ENST00000544622 EGFRP00533 1210 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 UBTFL1P0CB47 393 aaPredicted RBP14.34□□□□□ -0.11
YBX3-216ENST00000544622 PTPN12Q05209 780 aaKnown RBP14.34□□□□□ -0.11
YBX3-216ENST00000544622 LRRC24Q50LG9 513 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 TAF7LQ5H9L4 462 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 DACT2Q5SW24 774 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 VGLL2Q8N8G2 317 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 MEIS3Q99687 375 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 CNNM1Q9NRU3 951 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 A0A1B0GUL6 1792 aa14.34□□□□□ -0.11
YBX3-216ENST00000544622 USP17L3A6NCW0 530 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 USP17L4A6NCW7 530 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 G3V3G9 751 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 H7C1D1 291 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 IL1R1P14778 569 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 ZNF280AP59817 542 aaPredicted RBP14.33□□□□□ -0.12
YBX3-216ENST00000544622 UBE4AQ14139 1066 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 DCAF8Q5TAQ9 597 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 STRIP1Q5VSL9 837 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 ZKSCAN2Q63HK3 967 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 USP17L1Q7RTZ2 530 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 KLHDC4Q8TBB5 520 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 TRPM4Q8TD43 1214 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 FRAT1Q92837 279 aaPredicted RBP14.33□□□□□ -0.12
YBX3-216ENST00000544622 CD209Q9NNX6 404 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 CLEC11AQ9Y240 323 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 PSME4Q14997 1843 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 MROH5Q6ZUA9 1318 aa14.33□□□□□ -0.12
YBX3-216ENST00000544622 ZNF646O15015 1829 aaPredicted RBP14.32□□□□□ -0.12
YBX3-216ENST00000544622 SAMD7Q7Z3H4 446 aa14.32□□□□□ -0.12
YBX3-216ENST00000544622 CREBZFQ9NS37 354 aa14.32□□□□□ -0.12
YBX3-216ENST00000544622 HDAC5Q9UQL6 1122 aa14.32□□□□□ -0.12
YBX3-216ENST00000544622 PDE8BO95263 885 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 GNAI3P08754 354 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 KCNJ4P48050 445 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 MTX1Q13505 466 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 TTLL5Q6EMB2 1281 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 ATG9AQ7Z3C6 839 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 CLUAP1Q96AJ1 413 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 FBXO3Q9UK99 471 aa14.31□□□□□ -0.12
YBX3-216ENST00000544622 LRRFIP2Q9Y608 721 aaKnown RBP14.31□□□□□ -0.12
YBX3-216ENST00000544622 EYA2O00167 538 aa14.3□□□□□ -0.12
YBX3-216ENST00000544622 PLIN1O60240 522 aa14.3□□□□□ -0.12
YBX3-216ENST00000544622 FGFR2P21802 821 aa14.3□□□□□ -0.12
YBX3-216ENST00000544622 TMEM57Q8N5G2 664 aa14.3□□□□□ -0.12
YBX3-216ENST00000544622 KLRG1Q96E93 195 aa14.3□□□□□ -0.12
YBX3-216ENST00000544622 FAM84BQ96KN1 310 aaPredicted RBP14.3□□□□□ -0.12
YBX3-216ENST00000544622 MXD3Q9BW11 206 aa14.3□□□□□ -0.12
YBX3-216ENST00000544622 SASH1O94885 1247 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 USP17L8P0C7I0 530 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 RLBP1P12271 317 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 MMP14P50281 582 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 FMR1Q06787 632 aaKnown RBP eCLIP14.29□□□□□ -0.12
YBX3-216ENST00000544622 TBC1D10BQ4KMP7 808 aaPredicted RBP14.29□□□□□ -0.12
YBX3-216ENST00000544622 CST9Q5W186 159 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 JMYQ8N9B5 988 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 TDRD7Q8NHU6 1098 aaKnown RBP14.29□□□□□ -0.12
YBX3-216ENST00000544622 COPRSQ9NQ92 184 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 MYO3BQ8WXR4 1341 aa14.29□□□□□ -0.12
YBX3-216ENST00000544622 TMEM88BA6NKF7 163 aa14.28□□□□□ -0.12
YBX3-216ENST00000544622 CIAO1O76071 339 aa14.28□□□□□ -0.12
YBX3-216ENST00000544622 GTF2IP78347 998 aa14.28□□□□□ -0.12
YBX3-216ENST00000544622 ZNF804AQ7Z570 1209 aa14.28□□□□□ -0.12
YBX3-216ENST00000544622 FBXO33Q7Z6M2 555 aa14.28□□□□□ -0.12
YBX3-216ENST00000544622 TRAF5O00463 557 aa14.27□□□□□ -0.13
YBX3-216ENST00000544622 ZBTB7BO15156 539 aaPredicted RBP14.27□□□□□ -0.13
YBX3-216ENST00000544622 GYG1P46976 350 aa14.27□□□□□ -0.13
YBX3-216ENST00000544622 FKBP1AP62942 108 aaKnown RBP14.27□□□□□ -0.13
YBX3-216ENST00000544622 KIF4BQ2VIQ3 1234 aa14.27□□□□□ -0.13
YBX3-216ENST00000544622 METTL24Q5JXM2 366 aa14.27□□□□□ -0.13
YBX3-216ENST00000544622 CDC37L1Q7L3B6 337 aa14.27□□□□□ -0.13
YBX3-216ENST00000544622 DZIP1LQ8IYY4 767 aaKnown RBP14.27□□□□□ -0.13
YBX3-216ENST00000544622 CERS5Q8N5B7 392 aa14.27□□□□□ -0.13
YBX3-216ENST00000544622 MYOZ2Q9NPC6 264 aa14.27□□□□□ -0.13
YBX3-216ENST00000544622 FAM205AQ6ZU69 1335 aa14.26□□□□□ -0.13
YBX3-216ENST00000544622 GNAI2P04899 355 aa14.26□□□□□ -0.13
YBX3-216ENST00000544622 HIBADHP31937 336 aaKnown RBP14.26□□□□□ -0.13
YBX3-216ENST00000544622 RBM26Q5T8P6 1007 aaKnown RBP14.26□□□□□ -0.13
YBX3-216ENST00000544622 GLIS2Q9BZE0 524 aaPredicted RBP14.26□□□□□ -0.13
YBX3-216ENST00000544622 ASTN2O75129 1339 aaPredicted RBP14.25□□□□□ -0.13
YBX3-216ENST00000544622 SRGAP3O43295 1099 aa14.25□□□□□ -0.13
YBX3-216ENST00000544622 IL15P40933 162 aaPredicted RBP14.25□□□□□ -0.13
YBX3-216ENST00000544622 SCARF1Q14162 830 aa14.25□□□□□ -0.13
YBX3-216ENST00000544622 PUM3Q15397 648 aaKnown RBP14.25□□□□□ -0.13
YBX3-216ENST00000544622 LPIN2Q92539 896 aa14.25□□□□□ -0.13
YBX3-216ENST00000544622 ZBED3Q96IU2 234 aaPredicted RBP14.25□□□□□ -0.13
YBX3-216ENST00000544622 PA2G4Q9UQ80 394 aaKnown RBP14.25□□□□□ -0.13
YBX3-216ENST00000544622 PNMA6EA0A0J9YXQ4 647 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 RASSF10A6NK89 507 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 WNT10BO00744 389 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 ZBTB22O15209 634 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 USP48Q86UV5 1035 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 KIAA0825Q8IV33 1275 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 OGFOD1Q8N543 542 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 SIL1Q9H173 461 aa14.24□□□□□ -0.13
YBX3-216ENST00000544622 CNTNAP1P78357 1384 aa14.23□□□□□ -0.13
YBX3-216ENST00000544622 PITPNM2Q9BZ72 1349 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms