RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MYO1CO00159 1063 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 CABP4P57796 275 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 MRFAP1L1Q96HT8 127 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 CAPZA3Q96KX2 299 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 HMG20BQ9P0W2 317 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 ZFYVE16Q7Z3T8 1539 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 CLASP1Q7Z460 1538 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 SLC27A2O14975 620 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 CEP57Q86XR8 500 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 KLHL34Q8N239 644 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 PLEKHA4Q9H4M7 779 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 EDC4Q6P2E9 1401 aaKnown RBP16.31■□□□□ 0.2
LIMS1-215ENST00000544547 EIF5P55010 431 aaKnown RBP16.31■□□□□ 0.2
LIMS1-215ENST00000544547 CCDC158Q5M9N0 1113 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 LRRC59Q96AG4 307 aaKnown RBP16.31■□□□□ 0.2
LIMS1-215ENST00000544547 PPP1R13BQ96KQ4 1090 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 MAGEC2Q9UBF1 373 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-215ENST00000544547 MAP3K4Q9Y6R4 1608 aa16.31■□□□□ 0.2
LIMS1-215ENST00000544547 GOLIM4O00461 696 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 STX17P56962 302 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 FKBP15Q5T1M5 1219 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 CCDC91Q7Z6B0 441 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 PRDM11Q9NQV5 511 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 CTAGE9A4FU28 777 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 ATP5J2-PTCD1G3V325 749 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 ZEB2O60315 1214 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 PTCD1O75127 700 aaKnown RBP16.3■□□□□ 0.2
LIMS1-215ENST00000544547 CEP112Q8N8E3 955 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 KCNG4Q8TDN1 519 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 DESI2Q9BSY9 194 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 IKQ13123 557 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-215ENST00000544547 PPM1EQ8WY54 764 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 JADE2Q9NQC1 790 aa16.3■□□□□ 0.2
LIMS1-215ENST00000544547 HMGB1P09429 215 aaKnown RBP16.29■□□□□ 0.2
LIMS1-215ENST00000544547 RPS6KB1P23443 525 aa16.29■□□□□ 0.2
LIMS1-215ENST00000544547 FTOQ9C0B1 505 aaKnown RBP eCLIP16.29■□□□□ 0.2
LIMS1-215ENST00000544547 USP44Q9H0E7 712 aa16.29■□□□□ 0.2
LIMS1-215ENST00000544547 PDE11AQ9HCR9 933 aa16.29■□□□□ 0.2
LIMS1-215ENST00000544547 E9PCH4 1651 aa16.29■□□□□ 0.2
LIMS1-215ENST00000544547 SLC39A6Q13433 755 aa16.29■□□□□ 0.2
LIMS1-215ENST00000544547 IMMTQ16891 758 aaKnown RBP16.29■□□□□ 0.2
LIMS1-215ENST00000544547 CCDC129Q6ZRS4 1044 aa16.29■□□□□ 0.2
LIMS1-215ENST00000544547 TRIM66O15016 1216 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 MTX1Q13505 466 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 TRIM22Q8IYM9 498 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 NDUFB9Q9Y6M9 179 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 MYL5Q02045 173 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 KLHDC4Q8TBB5 520 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 SNRKQ9NRH2 765 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 IMPACTQ9P2X3 320 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 GUCA1BQ9UMX6 200 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 ADKP55263 362 aaKnown RBP16.28■□□□□ 0.2
LIMS1-215ENST00000544547 USP28Q96RU2 1077 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 BCCIPQ9P287 314 aaKnown RBP eCLIP16.28■□□□□ 0.2
LIMS1-215ENST00000544547 PHF8Q9UPP1 1060 aa16.28■□□□□ 0.2
LIMS1-215ENST00000544547 KLF18A0A0U1RQI7 1052 aa16.27■□□□□ 0.2
LIMS1-215ENST00000544547 CTIFO43310 598 aaKnown RBP16.27■□□□□ 0.2
LIMS1-215ENST00000544547 TDO2P48775 406 aa16.27■□□□□ 0.2
LIMS1-215ENST00000544547 GOLGA5Q8TBA6 731 aa16.27■□□□□ 0.2
LIMS1-215ENST00000544547 LGR6Q9HBX8 967 aa16.27■□□□□ 0.2
LIMS1-215ENST00000544547 N4BP3O15049 544 aa16.27■□□□□ 0.2
LIMS1-215ENST00000544547 AFMP43652 599 aa16.27■□□□□ 0.2
LIMS1-215ENST00000544547 MICU3Q86XE3 530 aa16.27■□□□□ 0.2
LIMS1-215ENST00000544547 GPR161Q8N6U8 529 aaKnown RBP16.27■□□□□ 0.2
LIMS1-215ENST00000544547 TTC39AQ5SRH9 613 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 OTUD6BQ8N6M0 293 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 ATRIPQ8WXE1 791 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 FLT4P35916 1363 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 EFCAB8A8MWE9 144 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 LIG3P49916 1009 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 UBE3BQ7Z3V4 1068 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 ANKLE2Q86XL3 938 aa16.27■□□□□ 0.19
LIMS1-215ENST00000544547 ELP1O95163 1332 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 SSBP05455 408 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIMS1-215ENST00000544547 IQCEQ6IPM2 695 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 GBP6Q6ZN66 633 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 MYCBPQ99417 103 aaPredicted RBP16.26■□□□□ 0.19
LIMS1-215ENST00000544547 MPHOSPH8Q99549 860 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 JRKLQ9Y4A0 524 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 NF2P35240 595 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 CDKL5O76039 1030 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 CCDC57Q2TAC2 916 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 LONRF3Q496Y0 759 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 AFAP1L1Q8TED9 768 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 CEP126Q9P2H0 1117 aa16.26■□□□□ 0.19
LIMS1-215ENST00000544547 MCM3P25205 808 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 TMEM87AQ8NBN3 555 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 LSG1Q9H089 658 aaKnown RBP16.25■□□□□ 0.19
LIMS1-215ENST00000544547 OSBPL3Q9H4L5 887 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 KIF1BO60333 1816 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 EDC3Q96F86 508 aaKnown RBP16.25■□□□□ 0.19
LIMS1-215ENST00000544547 HINFPQ9BQA5 517 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 ABCA6Q8N139 1617 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 UHRF1BP1LA0JNW5 1464 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 TTC41PQ6P2S7 1318 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 YEATS2Q9ULM3 1422 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 TET3O43151 1660 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 ZNF202O95125 648 aa16.25■□□□□ 0.19
LIMS1-215ENST00000544547 A0A087WZG4 1122 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 ARHGAP6O43182 974 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms