RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 KIF22Q14807 665 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 ZNF697Q5TEC3 545 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 DDX46Q7L014 1031 aaKnown RBP10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 ZBTB3Q9H5J0 574 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 ZFYVE28Q9HCC9 887 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 BIN2Q9UBW5 565 aaPredicted RBP10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 POLLQ9UGP5 575 aa10.45□□□□□ -0.74
CHMP4A-209ENST00000542700 NUP98P52948 1817 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 SSC5DA1L4H1 1573 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 ERVV-1B6SEH8 477 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 G3V3G9 751 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 GRK4P32298 578 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 CDCA8Q53HL2 280 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 DCAF8Q5TAQ9 597 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 PPP1R42Q7Z4L9 355 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 ALYREFQ86V81 257 aaKnown RBP10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 EYA3Q99504 573 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 HCN4Q9Y3Q4 1203 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 RIPOR2Q9Y4F9 1068 aa10.44□□□□□ -0.74
CHMP4A-209ENST00000542700 TESPA1A2RU30 521 aaPredicted RBP10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 SASH1O94885 1247 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 PRMT2P55345 433 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 GPSM2P81274 684 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 KIF6Q6ZMV9 814 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 RAET1EQ8TD07 263 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 CNKSR2Q8WXI2 1034 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 MYLIPQ8WY64 445 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 NECTIN2Q92692 538 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 GMLQ99445 158 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 UNC93B1Q9H1C4 597 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 LAMB2P55268 1798 aa10.43□□□□□ -0.74
CHMP4A-209ENST00000542700 LAMA2P24043 3122 aaKnown RBP10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 SGPL1O95470 568 aa10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 GNRH1P01148 92 aa10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 HCLS1P14317 486 aaPredicted RBP10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 UBXN2AP68543 259 aa10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 TTLL7Q6ZT98 887 aa10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 TMC4Q7Z404 712 aa10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 ZNF34Q8IZ26 560 aa10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 PAWRQ96IZ0 340 aaKnown RBP10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 PIEZO1Q92508 2521 aa10.42□□□□□ -0.74
CHMP4A-209ENST00000542700 GNAT3A8MTJ3 354 aa10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 WNT10BO00744 389 aa10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 TFRCP02786 760 aaKnown RBP10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 FOSL2P15408 326 aa10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 SLC10A5Q5PT55 438 aa10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 APOBEC3FQ8IUX4 373 aaKnown RBP10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 DIS3LQ8TF46 1054 aaKnown RBP10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 BRI3BPQ8WY22 251 aa10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 TRIM47Q96LD4 638 aa10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 UTP14AQ9BVJ6 771 aaKnown RBP10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 SRRDQ9UH36 339 aa10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 ARIH1Q9Y4X5 557 aaPredicted RBP10.41□□□□□ -0.74
CHMP4A-209ENST00000542700 ANKRD36CQ5JPF3 1778 aa10.4□□□□□ -0.74
CHMP4A-209ENST00000542700 MAP3K11Q16584 847 aa10.4□□□□□ -0.74
CHMP4A-209ENST00000542700 FAM43AQ8N2R8 423 aa10.4□□□□□ -0.74
CHMP4A-209ENST00000542700 TBC1D16Q8TBP0 767 aa10.4□□□□□ -0.74
CHMP4A-209ENST00000542700 ZC3H12CQ9C0D7 883 aaKnown RBP10.4□□□□□ -0.74
CHMP4A-209ENST00000542700 COL2A1P02458 1487 aaPredicted RBP10.4□□□□□ -0.74
CHMP4A-209ENST00000542700 CCL15-CCL14A0A0B4J2E2 113 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 PPP1R12BO60237 982 aaPredicted RBP10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 OSBPP22059 807 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 CTGFP29279 349 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 CCL15Q16663 113 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 PARP10Q53GL7 1025 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 NECAB2Q7Z6G3 386 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 OPTNQ96CV9 577 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 MS4A4AQ96JQ5 239 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 DEFB118Q96PH6 123 aa10.39□□□□□ -0.75
CHMP4A-209ENST00000542700 MYPNQ86TC9 1320 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 TLR2O60603 784 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 PSMC4P43686 418 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 USP38Q8NB14 1042 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 ADAMTS19Q8TE59 1207 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 CELF1Q92879 486 aaKnown RBP10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 C1QTNF1Q9BXJ1 281 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 ELP3Q9H9T3 547 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 CEMIPQ8WUJ3 1361 aa10.38□□□□□ -0.75
CHMP4A-209ENST00000542700 FAM205AQ6ZU69 1335 aa10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 WDHD1O75717 1129 aaPredicted RBP10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 UFL1O94874 794 aa10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 MYL6BP14649 208 aa10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 ZEB1P37275 1124 aaPredicted RBP10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 MDM2Q00987 491 aaPredicted RBP10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 GIGYF2Q6Y7W6 1299 aaKnown RBP10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 OGFOD1Q8N543 542 aa10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 MXD3Q9BW11 206 aa10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 SEMA6BQ9H3T3 888 aa10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 RRP7AQ9Y3A4 280 aaKnown RBP10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 PSME4Q14997 1843 aa10.37□□□□□ -0.75
CHMP4A-209ENST00000542700 COL1A1P02452 1464 aaPredicted RBP10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 USP17L3A6NCW0 530 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 USP17L4A6NCW7 530 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 FMNL1O95466 1100 aaPredicted RBP10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 HOXD10P28358 340 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 IREB2P48200 963 aaKnown RBP10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 USP17L1Q7RTZ2 530 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 MORC1Q86VD1 984 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 ANKRD13AQ8IZ07 590 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 GAS2L2Q8NHY3 880 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms