RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TTLL11Q8NHH1 800 aa23.01■■□□□ 1.27
CLSTN3-214ENST00000542663 MINPP1Q9UNW1 487 aa23.01■■□□□ 1.27
CLSTN3-214ENST00000542663 HPS5Q9UPZ3 1129 aa23.01■■□□□ 1.27
CLSTN3-214ENST00000542663 MAP3K2Q9Y2U5 619 aa23.01■■□□□ 1.27
CLSTN3-214ENST00000542663 APAF1O14727 1248 aa23■■□□□ 1.27
CLSTN3-214ENST00000542663 IGKV5-2P06315 115 aa23■■□□□ 1.27
CLSTN3-214ENST00000542663 CDC5LQ99459 802 aaKnown RBP23■■□□□ 1.27
CLSTN3-214ENST00000542663 GREM2Q9H772 168 aa23■■□□□ 1.27
CLSTN3-214ENST00000542663 BSDC1Q9NW68 430 aaPredicted RBP23■■□□□ 1.27
CLSTN3-214ENST00000542663 PCDH10Q9P2E7 1040 aa23■■□□□ 1.27
CLSTN3-214ENST00000542663 WNT10BO00744 389 aa22.99■■□□□ 1.27
CLSTN3-214ENST00000542663 TBC1D8O95759 1140 aa22.99■■□□□ 1.27
CLSTN3-214ENST00000542663 ZNF296Q8WUU4 475 aaPredicted RBP22.99■■□□□ 1.27
CLSTN3-214ENST00000542663 CACNA1FO60840 1977 aa22.99■■□□□ 1.27
CLSTN3-214ENST00000542663 DDX58O95786 925 aaKnown RBP22.98■■□□□ 1.27
CLSTN3-214ENST00000542663 TM4SF4P48230 202 aa22.98■■□□□ 1.27
CLSTN3-214ENST00000542663 CCT4P50991 539 aaKnown RBP22.98■■□□□ 1.27
CLSTN3-214ENST00000542663 TXNRD3Q86VQ6 643 aa22.98■■□□□ 1.27
CLSTN3-214ENST00000542663 TSPYL6Q8N831 410 aa22.98■■□□□ 1.27
CLSTN3-214ENST00000542663 CCDC30Q5VVM6 783 aa22.97■■□□□ 1.27
CLSTN3-214ENST00000542663 PI4KAP2A4QPH2 592 aa22.96■■□□□ 1.27
CLSTN3-214ENST00000542663 CALD1Q05682 793 aaKnown RBP22.96■■□□□ 1.27
CLSTN3-214ENST00000542663 STRIP1Q5VSL9 837 aa22.96■■□□□ 1.27
CLSTN3-214ENST00000542663 KSR2Q6VAB6 950 aa22.96■■□□□ 1.27
CLSTN3-214ENST00000542663 PI4KAP1Q8N8J0 262 aa22.96■■□□□ 1.27
CLSTN3-214ENST00000542663 MYO3BQ8WXR4 1341 aa22.96■■□□□ 1.27
CLSTN3-214ENST00000542663 SASH1O94885 1247 aa22.95■■□□□ 1.26
CLSTN3-214ENST00000542663 TTLL12Q14166 644 aaPredicted RBP22.95■■□□□ 1.26
CLSTN3-214ENST00000542663 PKN2Q16513 984 aaKnown RBP22.95■■□□□ 1.26
CLSTN3-214ENST00000542663 CWF19L2Q2TBE0 894 aaKnown RBP22.95■■□□□ 1.26
CLSTN3-214ENST00000542663 HDAC9Q9UKV0 1011 aa22.95■■□□□ 1.26
CLSTN3-214ENST00000542663 MKRN3Q13064 507 aaKnown RBP22.94■■□□□ 1.26
CLSTN3-214ENST00000542663 NOM1Q5C9Z4 860 aaKnown RBP22.94■■□□□ 1.26
CLSTN3-214ENST00000542663 OGFOD1Q8N543 542 aa22.94■■□□□ 1.26
CLSTN3-214ENST00000542663 FBXW7Q969H0 707 aa22.94■■□□□ 1.26
CLSTN3-214ENST00000542663 COA1Q9GZY4 146 aa22.94■■□□□ 1.26
CLSTN3-214ENST00000542663 HTTP42858 3142 aa22.93■■□□□ 1.26
CLSTN3-214ENST00000542663 GPR25O00155 361 aa22.93■■□□□ 1.26
CLSTN3-214ENST00000542663 KLRK1P26718 216 aa22.93■■□□□ 1.26
CLSTN3-214ENST00000542663 PTPN12Q05209 780 aaKnown RBP22.93■■□□□ 1.26
CLSTN3-214ENST00000542663 PRPF38BQ5VTL8 546 aaKnown RBP22.93■■□□□ 1.26
CLSTN3-214ENST00000542663 PRKRIP1Q9H875 184 aaPredicted RBP22.93■■□□□ 1.26
CLSTN3-214ENST00000542663 RBBP6Q7Z6E9 1792 aaKnown RBP22.92■■□□□ 1.26
CLSTN3-214ENST00000542663 NEURL1BA8MQ27 555 aa22.92■■□□□ 1.26
CLSTN3-214ENST00000542663 ZBED3Q96IU2 234 aaPredicted RBP22.92■■□□□ 1.26
CLSTN3-214ENST00000542663 R3HDMLQ9H3Y0 253 aa22.92■■□□□ 1.26
CLSTN3-214ENST00000542663 H7C1W4 665 aa22.91■■□□□ 1.26
CLSTN3-214ENST00000542663 NF2P35240 595 aa22.91■■□□□ 1.26
CLSTN3-214ENST00000542663 CFHR5Q9BXR6 569 aa22.91■■□□□ 1.26
CLSTN3-214ENST00000542663 LEMD3Q9Y2U8 911 aa22.91■■□□□ 1.26
CLSTN3-214ENST00000542663 OTOFQ9HC10 1997 aa22.9■■□□□ 1.26
CLSTN3-214ENST00000542663 PRKG1Q13976 671 aa22.9■■□□□ 1.26
CLSTN3-214ENST00000542663 TTLL5Q6EMB2 1281 aa22.9■■□□□ 1.26
CLSTN3-214ENST00000542663 G2E3Q7L622 706 aa22.9■■□□□ 1.26
CLSTN3-214ENST00000542663 UBE3BQ7Z3V4 1068 aa22.9■■□□□ 1.26
CLSTN3-214ENST00000542663 KIAA0825Q8IV33 1275 aa22.9■■□□□ 1.26
CLSTN3-214ENST00000542663 CHMP4AQ9BY43 222 aa22.9■■□□□ 1.26
CLSTN3-214ENST00000542663 CENPFP49454 3210 aa22.89■■□□□ 1.26
CLSTN3-214ENST00000542663 ZNF804BA4D1E1 1349 aa22.89■■□□□ 1.26
CLSTN3-214ENST00000542663 MMP14P50281 582 aa22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 NEXNQ0ZGT2 675 aa22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 SREBF2Q12772 1141 aa22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 LDLRAD1Q5T700 205 aa22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 FBXO46Q6PJ61 603 aaPredicted RBP22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 APOBEC3FQ8IUX4 373 aaKnown RBP22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 TSR2Q969E8 191 aaKnown RBP22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 FZD1Q9UP38 647 aa22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 SSC5DA1L4H1 1573 aa22.89■■□□□ 1.25
CLSTN3-214ENST00000542663 COL1A1P02452 1464 aaPredicted RBP22.88■■□□□ 1.25
CLSTN3-214ENST00000542663 ARMC9Q7Z3E5 817 aa22.88■■□□□ 1.25
CLSTN3-214ENST00000542663 PLA2G12BQ9BX93 195 aa22.88■■□□□ 1.25
CLSTN3-214ENST00000542663 ITGA6P23229 1130 aa22.87■■□□□ 1.25
CLSTN3-214ENST00000542663 IGHMBP2P38935 993 aaKnown RBP22.87■■□□□ 1.25
CLSTN3-214ENST00000542663 CASP7P55210 303 aa22.87■■□□□ 1.25
CLSTN3-214ENST00000542663 GTF2IP78347 998 aa22.87■■□□□ 1.25
CLSTN3-214ENST00000542663 SPRYD7Q5W111 196 aa22.87■■□□□ 1.25
CLSTN3-214ENST00000542663 MKI67P46013 3256 aaKnown RBP22.87■■□□□ 1.25
CLSTN3-214ENST00000542663 IRS2Q9Y4H2 1338 aa22.86■■□□□ 1.25
CLSTN3-214ENST00000542663 FKTNO75072 461 aa22.86■■□□□ 1.25
CLSTN3-214ENST00000542663 STK31Q9BXU1 1019 aa22.86■■□□□ 1.25
CLSTN3-214ENST00000542663 ANKRD2Q9GZV1 360 aa22.86■■□□□ 1.25
CLSTN3-214ENST00000542663 ANGEL1Q9UNK9 670 aaKnown RBP22.86■■□□□ 1.25
CLSTN3-214ENST00000542663 CSF1RP07333 972 aa22.85■■□□□ 1.25
CLSTN3-214ENST00000542663 GCKRQ14397 625 aa22.85■■□□□ 1.25
CLSTN3-214ENST00000542663 CERS5Q8N5B7 392 aa22.85■■□□□ 1.25
CLSTN3-214ENST00000542663 ARAP2Q8WZ64 1704 aa22.85■■□□□ 1.25
CLSTN3-214ENST00000542663 CHRNDQ07001 517 aa22.84■■□□□ 1.25
CLSTN3-214ENST00000542663 CD209Q9NNX6 404 aa22.84■■□□□ 1.25
CLSTN3-214ENST00000542663 PCDHAC2Q9Y5I4 1007 aa22.84■■□□□ 1.25
CLSTN3-214ENST00000542663 SNAP23O00161 211 aa22.83■■□□□ 1.25
CLSTN3-214ENST00000542663 MAP3K11Q16584 847 aa22.83■■□□□ 1.25
CLSTN3-214ENST00000542663 MPHOSPH8Q99549 860 aa22.83■■□□□ 1.25
CLSTN3-214ENST00000542663 DEFB129Q9H1M3 183 aa22.83■■□□□ 1.25
CLSTN3-214ENST00000542663 SLC4A2P04920 1241 aa22.82■■□□□ 1.24
CLSTN3-214ENST00000542663 TWISTNBQ3B726 338 aaPredicted RBP22.82■■□□□ 1.24
CLSTN3-214ENST00000542663 BRCA2P51587 3418 aa22.82■■□□□ 1.24
CLSTN3-214ENST00000542663 IFNL1Q8IU54 200 aa22.81■■□□□ 1.24
CLSTN3-214ENST00000542663 MTMR14Q8NCE2 650 aa22.81■■□□□ 1.24
CLSTN3-214ENST00000542663 CLMNQ96JQ2 1002 aa22.81■■□□□ 1.24
CLSTN3-214ENST00000542663 ALDH1A1P00352 501 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms