RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ATG9AQ7Z3C6 839 aa12.2□□□□□ -0.46
YBX3-212ENST00000542002 DZIP1LQ8IYY4 767 aaKnown RBP12.2□□□□□ -0.46
YBX3-212ENST00000542002 VGLL2Q8N8G2 317 aa12.2□□□□□ -0.46
YBX3-212ENST00000542002 YTHDC1Q96MU7 727 aaKnown RBP12.2□□□□□ -0.46
YBX3-212ENST00000542002 CNOT7Q9UIV1 285 aaKnown RBP12.2□□□□□ -0.46
YBX3-212ENST00000542002 RCAN3Q9UKA8 241 aa12.2□□□□□ -0.46
YBX3-212ENST00000542002 G3V3G9 751 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 GNAI3P08754 354 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 HSPA6P17066 643 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 FSTL1Q12841 308 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 DCAF8Q5TAQ9 597 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 C15orf52Q6ZUT6 534 aaKnown RBP12.19□□□□□ -0.46
YBX3-212ENST00000542002 PODNQ7Z5L7 613 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 SMC1BQ8NDV3 1235 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 GMLQ99445 158 aa12.19□□□□□ -0.46
YBX3-212ENST00000542002 PA2G4Q9UQ80 394 aaKnown RBP12.19□□□□□ -0.46
YBX3-212ENST00000542002 EYA2O00167 538 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 ITGBL1O95965 494 aaPredicted RBP12.18□□□□□ -0.46
YBX3-212ENST00000542002 KCNJ4P48050 445 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 HTRA3P83110 453 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 MAP1SQ66K74 1059 aaPredicted RBP12.18□□□□□ -0.46
YBX3-212ENST00000542002 CHADLQ6NUI6 762 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 SAMD7Q7Z3H4 446 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 MICALL2Q8IY33 904 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 TRPM4Q8TD43 1214 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 DPF2Q92785 391 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 FAM84BQ96KN1 310 aaPredicted RBP12.18□□□□□ -0.46
YBX3-212ENST00000542002 COA1Q9GZY4 146 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 CD209Q9NNX6 404 aa12.18□□□□□ -0.46
YBX3-212ENST00000542002 MROH5Q6ZUA9 1318 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 SPEF2Q9C093 1822 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 PNMA6EA0A0J9YXQ4 647 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 USP17L3A6NCW0 530 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 USP17L4A6NCW7 530 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 PDE8BO95263 885 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 GNAI2P04899 355 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 LMOD1P29536 600 aaPredicted RBP12.17□□□□□ -0.46
YBX3-212ENST00000542002 GYG1P46976 350 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 MTX1Q13505 466 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 METTL24Q5JXM2 366 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 DACT2Q5SW24 774 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 C20orf194Q5TEA3 1177 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 RSBN1LQ6PCB5 846 aaPredicted RBP12.17□□□□□ -0.46
YBX3-212ENST00000542002 USP50Q70EL3 339 aaPredicted RBP12.17□□□□□ -0.46
YBX3-212ENST00000542002 USP17L1Q7RTZ2 530 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 PNMA8AQ86V59 439 aaPredicted RBP12.17□□□□□ -0.46
YBX3-212ENST00000542002 LDHDQ86WU2 507 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 SIL1Q9H173 461 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 C1orf115Q9H7X2 142 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 ADARB2Q9NS39 739 aaKnown RBP12.17□□□□□ -0.46
YBX3-212ENST00000542002 CLEC11AQ9Y240 323 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.17□□□□□ -0.46
YBX3-212ENST00000542002 CEP350Q5VT06 3117 aa12.17□□□□□ -0.46
YBX3-212ENST00000542002 SRGAP3O43295 1099 aa12.16□□□□□ -0.46
YBX3-212ENST00000542002 FGFR2P21802 821 aa12.16□□□□□ -0.46
YBX3-212ENST00000542002 FMR1Q06787 632 aaKnown RBP eCLIP12.16□□□□□ -0.46
YBX3-212ENST00000542002 UBE4AQ14139 1066 aa12.16□□□□□ -0.46
YBX3-212ENST00000542002 ITPRIPQ8IWB1 547 aa12.16□□□□□ -0.46
YBX3-212ENST00000542002 FTSJ3Q8IY81 847 aaKnown RBP12.16□□□□□ -0.46
YBX3-212ENST00000542002 COPRSQ9NQ92 184 aa12.16□□□□□ -0.46
YBX3-212ENST00000542002 SCN9AQ15858 1988 aa12.16□□□□□ -0.46
YBX3-212ENST00000542002 IL1R1P14778 569 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 RPS12P25398 132 aaKnown RBP12.15□□□□□ -0.46
YBX3-212ENST00000542002 GTF2IP78347 998 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 TBC1D10BQ4KMP7 808 aaPredicted RBP12.15□□□□□ -0.46
YBX3-212ENST00000542002 RBM26Q5T8P6 1007 aaKnown RBP12.15□□□□□ -0.46
YBX3-212ENST00000542002 STRIP1Q5VSL9 837 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 TTLL5Q6EMB2 1281 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 DLK2Q6UY11 383 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 FBXO33Q7Z6M2 555 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 CNTROBQ8N137 903 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 CERS5Q8N5B7 392 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 PGAP2Q9UHJ9 254 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 HDAC5Q9UQL6 1122 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 JAG2Q9Y219 1238 aa12.15□□□□□ -0.46
YBX3-212ENST00000542002 ASTN2O75129 1339 aaPredicted RBP12.14□□□□□ -0.47
YBX3-212ENST00000542002 PASKQ96RG2 1323 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 H7C1D1 291 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 CIAO1O76071 339 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 BCAMP50895 628 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 ZNF280AP59817 542 aaPredicted RBP12.14□□□□□ -0.47
YBX3-212ENST00000542002 ATP8B2P98198 1209 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 DNAJC5GQ8N7S2 189 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 AGBL3Q8NEM8 1001 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 TDRD7Q8NHU6 1098 aaKnown RBP12.14□□□□□ -0.47
YBX3-212ENST00000542002 FBXW7Q969H0 707 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 COG6Q9Y2V7 657 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 SCN4AP35499 1836 aa12.14□□□□□ -0.47
YBX3-212ENST00000542002 TRAF5O00463 557 aa12.13□□□□□ -0.47
YBX3-212ENST00000542002 SASH1O94885 1247 aa12.13□□□□□ -0.47
YBX3-212ENST00000542002 USP17L8P0C7I0 530 aa12.13□□□□□ -0.47
YBX3-212ENST00000542002 HIBADHP31937 336 aaKnown RBP12.13□□□□□ -0.47
YBX3-212ENST00000542002 POLA2Q14181 598 aa12.13□□□□□ -0.47
YBX3-212ENST00000542002 ZNF804AQ7Z570 1209 aa12.13□□□□□ -0.47
YBX3-212ENST00000542002 IQSEC3Q9UPP2 1182 aaPredicted RBP12.13□□□□□ -0.47
YBX3-212ENST00000542002 ADAMTSL1Q8N6G6 1762 aa12.13□□□□□ -0.47
YBX3-212ENST00000542002 IL15P40933 162 aaPredicted RBP12.12□□□□□ -0.47
YBX3-212ENST00000542002 APLP1P51693 650 aa12.12□□□□□ -0.47
YBX3-212ENST00000542002 TIMM10P62072 90 aa12.12□□□□□ -0.47
YBX3-212ENST00000542002 TFCP2Q12800 502 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms