RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 A0A1B0GUL6 1792 aa19.92■□□□□ 0.78
CLSTN3-213ENST00000541953 USP17L3A6NCW0 530 aa19.91■□□□□ 0.78
CLSTN3-213ENST00000541953 USP17L4A6NCW7 530 aa19.91■□□□□ 0.78
CLSTN3-213ENST00000541953 USP17L8P0C7I0 530 aa19.91■□□□□ 0.78
CLSTN3-213ENST00000541953 HSP90B1P14625 803 aaKnown RBP19.91■□□□□ 0.78
CLSTN3-213ENST00000541953 DACT2Q5SW24 774 aa19.91■□□□□ 0.78
CLSTN3-213ENST00000541953 USP17L1Q7RTZ2 530 aa19.91■□□□□ 0.78
CLSTN3-213ENST00000541953 UBE3BQ7Z3V4 1068 aa19.91■□□□□ 0.78
CLSTN3-213ENST00000541953 MLLT1Q03111 559 aaPredicted RBP19.9■□□□□ 0.78
CLSTN3-213ENST00000541953 CCDC102AQ96A19 550 aa19.9■□□□□ 0.78
CLSTN3-213ENST00000541953 CDC5LQ99459 802 aaKnown RBP19.9■□□□□ 0.78
CLSTN3-213ENST00000541953 BSDC1Q9NW68 430 aaPredicted RBP19.9■□□□□ 0.78
CLSTN3-213ENST00000541953 H7C1W4 665 aa19.89■□□□□ 0.77
CLSTN3-213ENST00000541953 CCT4P50991 539 aaKnown RBP19.89■□□□□ 0.77
CLSTN3-213ENST00000541953 CASP7P55210 303 aa19.89■□□□□ 0.77
CLSTN3-213ENST00000541953 PODNQ7Z5L7 613 aa19.89■□□□□ 0.77
CLSTN3-213ENST00000541953 WWC1Q8IX03 1113 aa19.89■□□□□ 0.77
CLSTN3-213ENST00000541953 SAGE1Q9NXZ1 904 aa19.89■□□□□ 0.77
CLSTN3-213ENST00000541953 PITPNM2Q9BZ72 1349 aa19.88■□□□□ 0.77
CLSTN3-213ENST00000541953 SNAP23O00161 211 aa19.88■□□□□ 0.77
CLSTN3-213ENST00000541953 SASH1O94885 1247 aa19.88■□□□□ 0.77
CLSTN3-213ENST00000541953 TWISTNBQ3B726 338 aaPredicted RBP19.88■□□□□ 0.77
CLSTN3-213ENST00000541953 UBE2Q2LH0YL09 131 aa19.87■□□□□ 0.77
CLSTN3-213ENST00000541953 FBXW7Q969H0 707 aa19.87■□□□□ 0.77
CLSTN3-213ENST00000541953 WNT10BO00744 389 aa19.86■□□□□ 0.77
CLSTN3-213ENST00000541953 SLC4A2P04920 1241 aa19.86■□□□□ 0.77
CLSTN3-213ENST00000541953 STK31Q9BXU1 1019 aa19.86■□□□□ 0.77
CLSTN3-213ENST00000541953 HTTP42858 3142 aa19.86■□□□□ 0.77
CLSTN3-213ENST00000541953 ITGA6P23229 1130 aa19.85■□□□□ 0.77
CLSTN3-213ENST00000541953 NEXNQ0ZGT2 675 aa19.85■□□□□ 0.77
CLSTN3-213ENST00000541953 GCKRQ14397 625 aa19.85■□□□□ 0.77
CLSTN3-213ENST00000541953 FANCIQ9NVI1 1328 aa19.84■□□□□ 0.77
CLSTN3-213ENST00000541953 IRS2Q9Y4H2 1338 aa19.84■□□□□ 0.77
CLSTN3-213ENST00000541953 SOX10P56693 466 aa19.84■□□□□ 0.77
CLSTN3-213ENST00000541953 FLIIQ13045 1269 aa19.84■□□□□ 0.77
CLSTN3-213ENST00000541953 CCDC27Q2M243 656 aa19.84■□□□□ 0.77
CLSTN3-213ENST00000541953 PLA2G12BQ9BX93 195 aa19.84■□□□□ 0.77
CLSTN3-213ENST00000541953 FZD1Q9UP38 647 aa19.84■□□□□ 0.77
CLSTN3-213ENST00000541953 ZNF804BA4D1E1 1349 aa19.83■□□□□ 0.77
CLSTN3-213ENST00000541953 MKRN3Q13064 507 aaKnown RBP19.83■□□□□ 0.77
CLSTN3-213ENST00000541953 PCDHAC2Q9Y5I4 1007 aa19.83■□□□□ 0.77
CLSTN3-213ENST00000541953 CSF1RP07333 972 aa19.82■□□□□ 0.76
CLSTN3-213ENST00000541953 FKBP1BP68106 108 aa19.82■□□□□ 0.76
CLSTN3-213ENST00000541953 STRIP1Q5VSL9 837 aa19.82■□□□□ 0.76
CLSTN3-213ENST00000541953 KIAA0825Q8IV33 1275 aa19.82■□□□□ 0.76
CLSTN3-213ENST00000541953 ZBED3Q96IU2 234 aaPredicted RBP19.82■□□□□ 0.76
CLSTN3-213ENST00000541953 COA1Q9GZY4 146 aa19.82■□□□□ 0.76
CLSTN3-213ENST00000541953 AOX1Q06278 1338 aa19.81■□□□□ 0.76
CLSTN3-213ENST00000541953 SLC34A2O95436 690 aa19.81■□□□□ 0.76
CLSTN3-213ENST00000541953 IGHMBP2P38935 993 aaKnown RBP19.81■□□□□ 0.76
CLSTN3-213ENST00000541953 CHRNDQ07001 517 aa19.81■□□□□ 0.76
CLSTN3-213ENST00000541953 CERS5Q8N5B7 392 aa19.81■□□□□ 0.76
CLSTN3-213ENST00000541953 LEMD3Q9Y2U8 911 aa19.81■□□□□ 0.76
CLSTN3-213ENST00000541953 SSC5DA1L4H1 1573 aa19.81■□□□□ 0.76
CLSTN3-213ENST00000541953 F6X3S4 739 aa19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 TAF5LO75529 589 aa19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 GTF2IP78347 998 aa19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 FKBP5Q13451 457 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 PRKG1Q13976 671 aa19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 HELBQ8NG08 1087 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 DNAAF4Q8WXU2 420 aa19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 SPINK5Q9NQ38 1064 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 SALL2Q9Y467 1007 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 CENPFP49454 3210 aa19.8■□□□□ 0.76
CLSTN3-213ENST00000541953 ECM29Q5VYK3 1845 aa19.79■□□□□ 0.76
CLSTN3-213ENST00000541953 TBC1D8O95759 1140 aa19.79■□□□□ 0.76
CLSTN3-213ENST00000541953 TTLL5Q6EMB2 1281 aa19.79■□□□□ 0.76
CLSTN3-213ENST00000541953 R3HDMLQ9H3Y0 253 aa19.79■□□□□ 0.76
CLSTN3-213ENST00000541953 CACNA1FO60840 1977 aa19.79■□□□□ 0.76
CLSTN3-213ENST00000541953 IL16Q14005 1332 aa19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 MYO3BQ8WXR4 1341 aa19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 VAMP4O75379 141 aa19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 FOXO4P98177 505 aa19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 PTPN12Q05209 780 aaKnown RBP19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 TTLL12Q14166 644 aaPredicted RBP19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 EPHA10Q5JZY3 1008 aa19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 CTU1Q7Z7A3 348 aaKnown RBP19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 CHMP4AQ9BY43 222 aa19.78■□□□□ 0.76
CLSTN3-213ENST00000541953 EXOSC9Q06265 439 aaKnown RBP19.77■□□□□ 0.76
CLSTN3-213ENST00000541953 OGFOD1Q8N543 542 aa19.77■□□□□ 0.76
CLSTN3-213ENST00000541953 LINS1Q8NG48 757 aa19.77■□□□□ 0.76
CLSTN3-213ENST00000541953 ZNF296Q8WUU4 475 aaPredicted RBP19.77■□□□□ 0.76
CLSTN3-213ENST00000541953 MPHOSPH8Q99549 860 aa19.77■□□□□ 0.76
CLSTN3-213ENST00000541953 CD209Q9NNX6 404 aa19.77■□□□□ 0.76
CLSTN3-213ENST00000541953 JAG2Q9Y219 1238 aa19.77■□□□□ 0.76
CLSTN3-213ENST00000541953 BRCA2P51587 3418 aa19.77■□□□□ 0.75
CLSTN3-213ENST00000541953 PDE4DIPQ5VU43 2346 aa19.76■□□□□ 0.75
CLSTN3-213ENST00000541953 MKI67P46013 3256 aaKnown RBP19.76■□□□□ 0.75
CLSTN3-213ENST00000541953 ANKRD2Q9GZV1 360 aa19.76■□□□□ 0.75
CLSTN3-213ENST00000541953 ZNF594Q96JF6 807 aaPredicted RBP19.75■□□□□ 0.75
CLSTN3-213ENST00000541953 MYH16Q9H6N6 1097 aa19.75■□□□□ 0.75
CLSTN3-213ENST00000541953 BEND3Q5T5X7 828 aa19.74■□□□□ 0.75
CLSTN3-213ENST00000541953 HPS5Q9UPZ3 1129 aa19.74■□□□□ 0.75
CLSTN3-213ENST00000541953 LAMB1P07942 1786 aa19.74■□□□□ 0.75
CLSTN3-213ENST00000541953 ANKRD18BA2A2Z9 1011 aa19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 F8W031 263 aaPredicted RBP19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 KCNJ4P48050 445 aa19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 TM4SF4P48230 202 aa19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 LDLRAD1Q5T700 205 aa19.73■□□□□ 0.75
CLSTN3-213ENST00000541953 APOBEC3FQ8IUX4 373 aaKnown RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms