RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 RBM25P49756 843 aaKnown RBP8.92□□□□□ -0.98
VPS53-205ENST00000541903 NMIQ13287 307 aaPredicted RBP8.92□□□□□ -0.98
VPS53-205ENST00000541903 TTF1Q15361 905 aaPredicted RBP8.92□□□□□ -0.98
VPS53-205ENST00000541903 VPS37DQ86XT2 251 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 C2CD5Q86YS7 1000 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 MASTLQ96GX5 879 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 TMX4Q9H1E5 349 aaPredicted RBP8.92□□□□□ -0.98
VPS53-205ENST00000541903 ANO2Q9NQ90 1003 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 SNRKQ9NRH2 765 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 ANKIB1Q9P2G1 1089 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 LEMD3Q9Y2U8 911 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 NDUFB9Q9Y6M9 179 aa8.92□□□□□ -0.98
VPS53-205ENST00000541903 CASZ1Q86V15 1759 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 H0YIN7 160 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 SNAP23O00161 211 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 EPB41L2O43491 1005 aaKnown RBP8.91□□□□□ -0.98
VPS53-205ENST00000541903 ALDH1B1P30837 517 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 MCAMP43121 646 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 ZAP70P43403 619 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 SCARF1Q14162 830 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 STYK1Q6J9G0 422 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 SPATA5Q8NB90 893 aa8.91□□□□□ -0.98
VPS53-205ENST00000541903 UPF1Q92900 1129 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS53-205ENST00000541903 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS53-205ENST00000541903 C10orf71Q711Q0 1435 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 A0A0D9SFI3 127 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 SEMA3EO15041 775 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 RNF113AO15541 343 aaKnown RBP8.9□□□□□ -0.98
VPS53-205ENST00000541903 UFL1O94874 794 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 ZFYP08048 801 aaPredicted RBP8.9□□□□□ -0.98
VPS53-205ENST00000541903 ATP2B4P23634 1241 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 GYG1P46976 350 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 BCAMP50895 628 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 GPSM2P81274 684 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 RASGRF1Q13972 1273 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 ZSCAN25Q6NSZ9 544 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 PI16Q6UXB8 463 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 SP8Q8IXZ3 490 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 ZNF622Q969S3 477 aaKnown RBP eCLIP8.9□□□□□ -0.98
VPS53-205ENST00000541903 FAM227BQ96M60 508 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 USP26Q9BXU7 913 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 PDGFDQ9GZP0 370 aaPredicted RBP8.9□□□□□ -0.98
VPS53-205ENST00000541903 ANTXR1Q9H6X2 564 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 HMG20BQ9P0W2 317 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 GGA1Q9UJY5 639 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 ATP6V0A2Q9Y487 856 aa8.9□□□□□ -0.98
VPS53-205ENST00000541903 A0A1B0GUL6 1792 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 MED23Q9ULK4 1368 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 EP400Q96L91 3159 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 FRAT2O75474 233 aaPredicted RBP8.89□□□□□ -0.99
VPS53-205ENST00000541903 IDH1O75874 414 aaKnown RBP8.89□□□□□ -0.99
VPS53-205ENST00000541903 POLD1P28340 1107 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 HIBADHP31937 336 aaKnown RBP8.89□□□□□ -0.99
VPS53-205ENST00000541903 MCMDC2Q4G0Z9 681 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 ZNF804AQ7Z570 1209 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 CNKSR1Q969H4 720 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 IPO9Q96P70 1041 aaKnown RBP8.89□□□□□ -0.99
VPS53-205ENST00000541903 MTFR1LQ9H019 292 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 IL25Q9H293 177 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 PIH1D3Q9NQM4 214 aaKnown RBP8.89□□□□□ -0.99
VPS53-205ENST00000541903 HELLSQ9NRZ9 838 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 DAXXQ9UER7 740 aaPredicted RBP8.89□□□□□ -0.99
VPS53-205ENST00000541903 DENND2AQ9ULE3 1009 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 NSFL1CQ9UNZ2 370 aaKnown RBP8.89□□□□□ -0.99
VPS53-205ENST00000541903 AK9Q5TCS8 1911 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 ANKRD31Q8N7Z5 1873 aa8.89□□□□□ -0.99
VPS53-205ENST00000541903 PDS5AQ29RF7 1337 aaKnown RBP8.88□□□□□ -0.99
VPS53-205ENST00000541903 CCDC171Q6TFL3 1326 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 ZBTB7AO95365 584 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 CYP2E1P05181 493 aaPredicted RBP8.88□□□□□ -0.99
VPS53-205ENST00000541903 KLRK1P26718 216 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 MAP3K12Q12852 859 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 BECN1Q14457 450 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 R3HDM1Q15032 1099 aaKnown RBP8.88□□□□□ -0.99
VPS53-205ENST00000541903 WASHC4Q2M389 1173 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 ZMYM1Q5SVZ6 1142 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 C15orf52Q6ZUT6 534 aaKnown RBP8.88□□□□□ -0.99
VPS53-205ENST00000541903 FBXO33Q7Z6M2 555 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 APPBP2Q92624 585 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 FAM84BQ96KN1 310 aaPredicted RBP8.88□□□□□ -0.99
VPS53-205ENST00000541903 LSG1Q9H089 658 aaKnown RBP8.88□□□□□ -0.99
VPS53-205ENST00000541903 PODXL2Q9NZ53 605 aa8.88□□□□□ -0.99
VPS53-205ENST00000541903 COL11A2P13942 1736 aaPredicted RBP8.88□□□□□ -0.99
VPS53-205ENST00000541903 WTIPA6NIX2 430 aaPredicted RBP8.87□□□□□ -0.99
VPS53-205ENST00000541903 C6orf229H3BNL8 230 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 CHRNA5P30532 468 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 ANAPC15P60006 121 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 RABEP1Q15276 862 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 UBE3CQ15386 1083 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 PRPF40BQ6NWY9 871 aaKnown RBP8.87□□□□□ -0.99
VPS53-205ENST00000541903 DPP8Q6V1X1 898 aaPredicted RBP8.87□□□□□ -0.99
VPS53-205ENST00000541903 MPNDQ8N594 471 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 TBC1D16Q8TBP0 767 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 LRP2BPQ9P2M1 347 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 IQSEC3Q9UPP2 1182 aaPredicted RBP8.87□□□□□ -0.99
VPS53-205ENST00000541903 LRRC37AA6NMS7 1700 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 TAF1P21675 1872 aa8.87□□□□□ -0.99
VPS53-205ENST00000541903 MAST3O60307 1309 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 IRS2Q9Y4H2 1338 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 COL1A1P02452 1464 aaPredicted RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms