RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 TAF5LO75529 589 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 BBOX1O75936 387 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 ALDH1B1P30837 517 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 TGFB2P61812 414 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 NUCB1Q02818 461 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 HSP90AB4PQ58FF6 505 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 OLFM4Q6UX06 510 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 C16orf71Q8IYS4 520 aaPredicted RBP11.54□□□□□ -0.56
DDX55-208ENST00000541259 NLGN2Q8NFZ4 835 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 LRRCC1Q9C099 1032 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 WWC3Q9ULE0 1092 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 MINPP1Q9UNW1 487 aa11.54□□□□□ -0.56
DDX55-208ENST00000541259 SNAP23O00161 211 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 PPEF1O14829 653 aaPredicted RBP11.53□□□□□ -0.56
DDX55-208ENST00000541259 CHRNDQ07001 517 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 METTL24Q5JXM2 366 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 CHD1LQ86WJ1 897 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 ERC1Q8IUD2 1116 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 VGLL2Q8N8G2 317 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 KIF1BPQ96EK5 621 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 FHDC1Q9C0D6 1143 aaPredicted RBP11.53□□□□□ -0.56
DDX55-208ENST00000541259 LNPKQ9C0E8 428 aa11.53□□□□□ -0.56
DDX55-208ENST00000541259 LTBP1Q14766 1721 aa11.52□□□□□ -0.56
DDX55-208ENST00000541259 PDE4AP27815 886 aa11.52□□□□□ -0.57
DDX55-208ENST00000541259 TIMM10P62072 90 aa11.52□□□□□ -0.57
DDX55-208ENST00000541259 PRPF40BQ6NWY9 871 aaKnown RBP11.52□□□□□ -0.57
DDX55-208ENST00000541259 OTUD7AQ8TE49 926 aaPredicted RBP11.52□□□□□ -0.57
DDX55-208ENST00000541259 CNKSR1Q969H4 720 aa11.52□□□□□ -0.57
DDX55-208ENST00000541259 EAF2Q96CJ1 260 aaPredicted RBP11.52□□□□□ -0.57
DDX55-208ENST00000541259 CEP126Q9P2H0 1117 aa11.52□□□□□ -0.57
DDX55-208ENST00000541259 MROH5Q6ZUA9 1318 aa11.52□□□□□ -0.57
DDX55-208ENST00000541259 ARAP2Q8WZ64 1704 aa11.52□□□□□ -0.57
DDX55-208ENST00000541259 ARFGEF1Q9Y6D6 1849 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 PDE8BO95263 885 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 GPSM2P81274 684 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 EVX2Q03828 476 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 SP8Q8IXZ3 490 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 TTLL6Q8N841 843 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 C7orf43Q8WVR3 580 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 CCDC8Q9H0W5 538 aaPredicted RBP11.51□□□□□ -0.57
DDX55-208ENST00000541259 RYDENQ9NUL5 291 aaKnown RBP11.51□□□□□ -0.57
DDX55-208ENST00000541259 PIM2Q9P1W9 311 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 ATP6V0A2Q9Y487 856 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 CCDC88AQ3V6T2 1871 aa11.51□□□□□ -0.57
DDX55-208ENST00000541259 FGFR2P21802 821 aa11.5□□□□□ -0.57
DDX55-208ENST00000541259 TNNI3KQ59H18 835 aa11.5□□□□□ -0.57
DDX55-208ENST00000541259 TLR7Q9NYK1 1049 aaKnown RBP11.5□□□□□ -0.57
DDX55-208ENST00000541259 FPGT-TNNI3KV9GXZ4 949 aa11.5□□□□□ -0.57
DDX55-208ENST00000541259 ZNF609O15014 1411 aa11.5□□□□□ -0.57
DDX55-208ENST00000541259 FER1L6Q2WGJ9 1857 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 CHD4Q14839 1912 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 A0A1B0GUL7 405 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 C21orf2O43822 256 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 ADORA1P30542 326 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 ATP2B3Q16720 1220 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 TMC4Q7Z404 712 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 AACSQ86V21 672 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 CLASRPQ8N2M8 674 aaKnown RBP11.49□□□□□ -0.57
DDX55-208ENST00000541259 NEUROD6Q96NK8 337 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 GPR101Q96P66 508 aaPredicted RBP11.49□□□□□ -0.57
DDX55-208ENST00000541259 SYT17Q9BSW7 474 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 TMEM106CQ9BVX2 250 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 ANKRD2Q9GZV1 360 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 GPR108Q9NPR9 543 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 ANKIB1Q9P2G1 1089 aa11.49□□□□□ -0.57
DDX55-208ENST00000541259 NSFL1CQ9UNZ2 370 aaKnown RBP11.49□□□□□ -0.57
DDX55-208ENST00000541259 GOLGB1Q14789 3259 aaKnown RBP11.49□□□□□ -0.57
DDX55-208ENST00000541259 AKAP11Q9UKA4 1901 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 MYH13Q9UKX3 1938 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 KLRK1P26718 216 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 RGS3P49796 1198 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 PUM3Q15397 648 aaKnown RBP11.48□□□□□ -0.57
DDX55-208ENST00000541259 DALRD3Q5D0E6 543 aaKnown RBP11.48□□□□□ -0.57
DDX55-208ENST00000541259 TSHZ3Q63HK5 1081 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 DBNDD2Q9BQY9 259 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 POLLQ9UGP5 575 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 DBNLQ9UJU6 430 aaKnown RBP11.48□□□□□ -0.57
DDX55-208ENST00000541259 AKAP2Q9Y2D5 859 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 XDHP47989 1333 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 SALL3Q9BXA9 1300 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 DUOX1Q9NRD9 1551 aa11.48□□□□□ -0.57
DDX55-208ENST00000541259 MYO5AQ9Y4I1 1855 aaKnown RBP11.48□□□□□ -0.57
DDX55-208ENST00000541259 SRCAPQ6ZRS2 3230 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 AK9Q5TCS8 1911 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 SNED1Q8TER0 1413 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 ZNF804BA4D1E1 1349 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 IFIT2P09913 472 aaKnown RBP11.47□□□□□ -0.57
DDX55-208ENST00000541259 TXNRD3Q86VQ6 643 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 PLEKHM2Q8IWE5 1019 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 MPNDQ8N594 471 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 TBC1D16Q8TBP0 767 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 LPIN2Q92539 896 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 XAGE2Q96GT9 111 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 PODXL2Q9NZ53 605 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 BCS1LQ9Y276 419 aa11.47□□□□□ -0.57
DDX55-208ENST00000541259 IRS2Q9Y4H2 1338 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 GALR2O43603 387 aaPredicted RBP11.46□□□□□ -0.57
DDX55-208ENST00000541259 UFL1O94874 794 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 SLC5A1P13866 664 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 ATP2B4P23634 1241 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms