RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 ECE2O60344 883 aa23.22■■□□□ 1.31
VPS33A-205ENST00000541169 SLC5A1P13866 664 aa23.22■■□□□ 1.31
VPS33A-205ENST00000541169 CRBNQ96SW2 442 aa23.22■■□□□ 1.31
VPS33A-205ENST00000541169 OS9Q13438 667 aaPredicted RBP23.21■■□□□ 1.31
VPS33A-205ENST00000541169 FGFR2P21802 821 aa23.2■■□□□ 1.3
VPS33A-205ENST00000541169 DBNDD1Q9H9R9 158 aa23.2■■□□□ 1.3
VPS33A-205ENST00000541169 GPR108Q9NPR9 543 aa23.2■■□□□ 1.3
VPS33A-205ENST00000541169 IRS2Q9Y4H2 1338 aa23.19■■□□□ 1.3
VPS33A-205ENST00000541169 ATP2B3Q16720 1220 aa23.19■■□□□ 1.3
VPS33A-205ENST00000541169 CIAPIN1Q6FI81 312 aa23.19■■□□□ 1.3
VPS33A-205ENST00000541169 VPS37DQ86XT2 251 aa23.19■■□□□ 1.3
VPS33A-205ENST00000541169 L3MBTL3Q96JM7 780 aaPredicted RBP23.19■■□□□ 1.3
VPS33A-205ENST00000541169 GPBP1L1Q9HC44 474 aaPredicted RBP23.19■■□□□ 1.3
VPS33A-205ENST00000541169 COL4A5P29400 1685 aa23.19■■□□□ 1.3
VPS33A-205ENST00000541169 IQCA1LA6NCM1 817 aa23.18■■□□□ 1.3
VPS33A-205ENST00000541169 ZBTB22O15209 634 aa23.18■■□□□ 1.3
VPS33A-205ENST00000541169 RAB11FIP3O75154 756 aa23.18■■□□□ 1.3
VPS33A-205ENST00000541169 HIBADHP31937 336 aaKnown RBP23.18■■□□□ 1.3
VPS33A-205ENST00000541169 MMP14P50281 582 aa23.18■■□□□ 1.3
VPS33A-205ENST00000541169 CXCL9Q07325 125 aa23.18■■□□□ 1.3
VPS33A-205ENST00000541169 DOK7Q18PE1 504 aa23.18■■□□□ 1.3
VPS33A-205ENST00000541169 IL1R1P14778 569 aa23.17■■□□□ 1.3
VPS33A-205ENST00000541169 RPS12P25398 132 aaKnown RBP23.17■■□□□ 1.3
VPS33A-205ENST00000541169 SIRT2Q8IXJ6 389 aa23.17■■□□□ 1.3
VPS33A-205ENST00000541169 CD209Q9NNX6 404 aa23.17■■□□□ 1.3
VPS33A-205ENST00000541169 WDR90Q96KV7 1748 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 ZNF541Q9H0D2 1346 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 USP17L3A6NCW0 530 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 USP17L4A6NCW7 530 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 TFCP2Q12800 502 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 USP17L1Q7RTZ2 530 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 TXNRD3Q86VQ6 643 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 ZNF784Q8NCA9 323 aaPredicted RBP23.16■■□□□ 1.3
VPS33A-205ENST00000541169 GPR101Q96P66 508 aaPredicted RBP23.16■■□□□ 1.3
VPS33A-205ENST00000541169 GNL3LQ9NVN8 582 aaKnown RBP23.16■■□□□ 1.3
VPS33A-205ENST00000541169 ZNF609O15014 1411 aa23.16■■□□□ 1.3
VPS33A-205ENST00000541169 PSME4Q14997 1843 aa23.15■■□□□ 1.3
VPS33A-205ENST00000541169 MYO3BQ8WXR4 1341 aa23.15■■□□□ 1.3
VPS33A-205ENST00000541169 WTIPA6NIX2 430 aaPredicted RBP23.15■■□□□ 1.3
VPS33A-205ENST00000541169 YDJCA8MPS7 323 aa23.15■■□□□ 1.3
VPS33A-205ENST00000541169 VEGFAP15692 232 aaPredicted RBP23.15■■□□□ 1.3
VPS33A-205ENST00000541169 STRIP1Q5VSL9 837 aa23.15■■□□□ 1.3
VPS33A-205ENST00000541169 FBXO33Q7Z6M2 555 aa23.15■■□□□ 1.3
VPS33A-205ENST00000541169 FAM84BQ96KN1 310 aaPredicted RBP23.15■■□□□ 1.3
VPS33A-205ENST00000541169 SCN4AP35499 1836 aa23.15■■□□□ 1.3
VPS33A-205ENST00000541169 DDNO94850 711 aaPredicted RBP23.14■■□□□ 1.29
VPS33A-205ENST00000541169 SASH1O94885 1247 aa23.14■■□□□ 1.29
VPS33A-205ENST00000541169 VIL1P09327 827 aaKnown RBP23.14■■□□□ 1.29
VPS33A-205ENST00000541169 DPF2Q92785 391 aa23.14■■□□□ 1.29
VPS33A-205ENST00000541169 KIF1BPQ96EK5 621 aa23.14■■□□□ 1.29
VPS33A-205ENST00000541169 SNAP23O00161 211 aa23.13■■□□□ 1.29
VPS33A-205ENST00000541169 SEMA3EO15041 775 aa23.13■■□□□ 1.29
VPS33A-205ENST00000541169 RAD17O75943 681 aa23.13■■□□□ 1.29
VPS33A-205ENST00000541169 KLRK1P26718 216 aa23.13■■□□□ 1.29
VPS33A-205ENST00000541169 LMOD1P29536 600 aaPredicted RBP23.13■■□□□ 1.29
VPS33A-205ENST00000541169 FKBP1AP62942 108 aaKnown RBP23.13■■□□□ 1.29
VPS33A-205ENST00000541169 AGBL3Q8NEM8 1001 aa23.13■■□□□ 1.29
VPS33A-205ENST00000541169 TDRD7Q8NHU6 1098 aaKnown RBP23.13■■□□□ 1.29
VPS33A-205ENST00000541169 GJA3Q9Y6H8 435 aa23.13■■□□□ 1.29
VPS33A-205ENST00000541169 ARAP2Q8WZ64 1704 aa23.13■■□□□ 1.29
VPS33A-205ENST00000541169 A0A1B0GUL7 405 aa23.12■■□□□ 1.29
VPS33A-205ENST00000541169 EXOC6BQ9Y2D4 811 aa23.12■■□□□ 1.29
VPS33A-205ENST00000541169 PSMD14O00487 310 aa23.11■■□□□ 1.29
VPS33A-205ENST00000541169 GYG1P46976 350 aa23.11■■□□□ 1.29
VPS33A-205ENST00000541169 HDAC1Q13547 482 aaPredicted RBP23.11■■□□□ 1.29
VPS33A-205ENST00000541169 TTLL5Q6EMB2 1281 aa23.11■■□□□ 1.29
VPS33A-205ENST00000541169 DCTPP1Q9H773 170 aa23.11■■□□□ 1.29
VPS33A-205ENST00000541169 PCDHB15Q9Y5E8 787 aa23.11■■□□□ 1.29
VPS33A-205ENST00000541169 FRAT2O75474 233 aaPredicted RBP23.1■■□□□ 1.29
VPS33A-205ENST00000541169 TNNI3KQ59H18 835 aa23.1■■□□□ 1.29
VPS33A-205ENST00000541169 GORABQ5T7V8 394 aa23.1■■□□□ 1.29
VPS33A-205ENST00000541169 RSBN1LQ6PCB5 846 aaPredicted RBP23.1■■□□□ 1.29
VPS33A-205ENST00000541169 CLASRPQ8N2M8 674 aaKnown RBP23.1■■□□□ 1.29
VPS33A-205ENST00000541169 RHPN1Q8TCX5 695 aa23.1■■□□□ 1.29
VPS33A-205ENST00000541169 RWDD1Q9H446 243 aaPredicted RBP23.1■■□□□ 1.29
VPS33A-205ENST00000541169 HACL1Q9UJ83 578 aa23.1■■□□□ 1.29
VPS33A-205ENST00000541169 FPGT-TNNI3KV9GXZ4 949 aa23.1■■□□□ 1.29
VPS33A-205ENST00000541169 FAM205AQ6ZU69 1335 aa23.09■■□□□ 1.29
VPS33A-205ENST00000541169 TIMM10P62072 90 aa23.09■■□□□ 1.29
VPS33A-205ENST00000541169 PNMA8AQ86V59 439 aaPredicted RBP23.09■■□□□ 1.29
VPS33A-205ENST00000541169 EXOC6Q8TAG9 804 aa23.09■■□□□ 1.29
VPS33A-205ENST00000541169 ZNF526Q8TF50 670 aaPredicted RBP23.09■■□□□ 1.29
VPS33A-205ENST00000541169 TBC1D22AQ8WUA7 517 aa23.09■■□□□ 1.29
VPS33A-205ENST00000541169 NEUROD6Q96NK8 337 aa23.09■■□□□ 1.29
VPS33A-205ENST00000541169 SCN9AQ15858 1988 aa23.09■■□□□ 1.29
VPS33A-205ENST00000541169 DACT2Q5SW24 774 aa23.08■■□□□ 1.29
VPS33A-205ENST00000541169 GCC1Q96CN9 775 aa23.08■■□□□ 1.29
VPS33A-205ENST00000541169 XAGE2Q96GT9 111 aa23.08■■□□□ 1.29
VPS33A-205ENST00000541169 GPRC5DQ9NZD1 345 aa23.08■■□□□ 1.29
VPS33A-205ENST00000541169 PDS5AQ29RF7 1337 aaKnown RBP23.08■■□□□ 1.28
VPS33A-205ENST00000541169 H7C1D1 291 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 UQCRFS1P1P0C7P4 283 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 BCAMP50895 628 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 GTF2IP78347 998 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 CCDC158Q5M9N0 1113 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 C16orf71Q8IYS4 520 aaPredicted RBP23.07■■□□□ 1.28
VPS33A-205ENST00000541169 LRRCC1Q9C099 1032 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 RRAGCQ9HB90 399 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 DENND2AQ9ULE3 1009 aa23.07■■□□□ 1.28
VPS33A-205ENST00000541169 GMPSP49915 693 aaPredicted RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms