RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 C16orf71Q8IYS4 520 aaPredicted RBP21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 VGLL2Q8N8G2 317 aa21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 DCTPP1Q9H773 170 aa21.6■■□□□ 1.05
CLSTN3-210ENST00000540931 HTRA3P83110 453 aa21.59■■□□□ 1.05
CLSTN3-210ENST00000540931 OLFM4Q6UX06 510 aa21.59■■□□□ 1.05
CLSTN3-210ENST00000540931 PODNQ7Z5L7 613 aa21.59■■□□□ 1.05
CLSTN3-210ENST00000540931 KLRG1Q96E93 195 aa21.59■■□□□ 1.05
CLSTN3-210ENST00000540931 COA1Q9GZY4 146 aa21.59■■□□□ 1.05
CLSTN3-210ENST00000540931 PCDHB15Q9Y5E8 787 aa21.59■■□□□ 1.05
CLSTN3-210ENST00000540931 KDM2BQ8NHM5 1336 aa21.58■■□□□ 1.05
CLSTN3-210ENST00000540931 LTBP1Q14766 1721 aa21.58■■□□□ 1.05
CLSTN3-210ENST00000540931 TAF5LO75529 589 aa21.58■■□□□ 1.05
CLSTN3-210ENST00000540931 ATP2B3Q16720 1220 aa21.58■■□□□ 1.05
CLSTN3-210ENST00000540931 JMYQ8N9B5 988 aa21.58■■□□□ 1.05
CLSTN3-210ENST00000540931 ZNF277Q9NRM2 450 aaPredicted RBP21.58■■□□□ 1.05
CLSTN3-210ENST00000540931 RNF181Q9P0P0 153 aa21.58■■□□□ 1.05
CLSTN3-210ENST00000540931 ZBTB22O15209 634 aa21.57■■□□□ 1.04
CLSTN3-210ENST00000540931 DPY19L2Q6NUT2 758 aa21.57■■□□□ 1.04
CLSTN3-210ENST00000540931 VPS37DQ86XT2 251 aa21.57■■□□□ 1.04
CLSTN3-210ENST00000540931 CLASRPQ8N2M8 674 aaKnown RBP21.57■■□□□ 1.04
CLSTN3-210ENST00000540931 HELBQ8NG08 1087 aaPredicted RBP21.57■■□□□ 1.04
CLSTN3-210ENST00000540931 GNL3LQ9NVN8 582 aaKnown RBP21.57■■□□□ 1.04
CLSTN3-210ENST00000540931 EIF6P56537 245 aaKnown RBP21.56■■□□□ 1.04
CLSTN3-210ENST00000540931 RASSF7Q02833 373 aa21.56■■□□□ 1.04
CLSTN3-210ENST00000540931 LRRCC1Q9C099 1032 aa21.56■■□□□ 1.04
CLSTN3-210ENST00000540931 RRAGCQ9HB90 399 aa21.56■■□□□ 1.04
CLSTN3-210ENST00000540931 ZNRF3Q9ULT6 936 aa21.56■■□□□ 1.04
CLSTN3-210ENST00000540931 COL4A1P02462 1669 aa21.56■■□□□ 1.04
CLSTN3-210ENST00000540931 SBF1O95248 1867 aa21.56■■□□□ 1.04
CLSTN3-210ENST00000540931 FGFR2P21802 821 aa21.55■■□□□ 1.04
CLSTN3-210ENST00000540931 TFCP2Q12800 502 aa21.55■■□□□ 1.04
CLSTN3-210ENST00000540931 AOC3Q16853 763 aa21.55■■□□□ 1.04
CLSTN3-210ENST00000540931 RHPN1Q8TCX5 695 aa21.55■■□□□ 1.04
CLSTN3-210ENST00000540931 EXOC6BQ9Y2D4 811 aa21.55■■□□□ 1.04
CLSTN3-210ENST00000540931 DUOX1Q9NRD9 1551 aa21.54■■□□□ 1.04
CLSTN3-210ENST00000540931 SASH1O94885 1247 aa21.54■■□□□ 1.04
CLSTN3-210ENST00000540931 HIBADHP31937 336 aaKnown RBP21.54■■□□□ 1.04
CLSTN3-210ENST00000540931 MMP14P50281 582 aa21.54■■□□□ 1.04
CLSTN3-210ENST00000540931 IRX6P78412 446 aaPredicted RBP21.54■■□□□ 1.04
CLSTN3-210ENST00000540931 TNIP1Q15025 636 aa21.54■■□□□ 1.04
CLSTN3-210ENST00000540931 DICER1Q9UPY3 1922 aaKnown RBP21.54■■□□□ 1.04
CLSTN3-210ENST00000540931 FZD9O00144 591 aa21.53■■□□□ 1.04
CLSTN3-210ENST00000540931 SEMA3EO15041 775 aa21.53■■□□□ 1.04
CLSTN3-210ENST00000540931 GORABQ5T7V8 394 aa21.53■■□□□ 1.04
CLSTN3-210ENST00000540931 A0A1B0GUL7 405 aa21.52■■□□□ 1.04
CLSTN3-210ENST00000540931 RIMBP2O15034 1052 aa21.52■■□□□ 1.04
CLSTN3-210ENST00000540931 TNNI3KQ59H18 835 aa21.52■■□□□ 1.04
CLSTN3-210ENST00000540931 COL13A1Q5TAT6 717 aaPredicted RBP21.52■■□□□ 1.04
CLSTN3-210ENST00000540931 FPGT-TNNI3KV9GXZ4 949 aa21.52■■□□□ 1.04
CLSTN3-210ENST00000540931 A0A1B0GUL6 1792 aa21.51■■□□□ 1.03
CLSTN3-210ENST00000540931 CCDC158Q5M9N0 1113 aa21.51■■□□□ 1.03
CLSTN3-210ENST00000540931 NEUROD6Q96NK8 337 aa21.51■■□□□ 1.03
CLSTN3-210ENST00000540931 ECE2O60344 883 aa21.5■■□□□ 1.03
CLSTN3-210ENST00000540931 IGSF3O75054 1194 aa21.5■■□□□ 1.03
CLSTN3-210ENST00000540931 IL1R1P14778 569 aa21.5■■□□□ 1.03
CLSTN3-210ENST00000540931 FBXO33Q7Z6M2 555 aa21.5■■□□□ 1.03
CLSTN3-210ENST00000540931 CD209Q9NNX6 404 aa21.5■■□□□ 1.03
CLSTN3-210ENST00000540931 MYO3BQ8WXR4 1341 aa21.5■■□□□ 1.03
CLSTN3-210ENST00000540931 FRAT2O75474 233 aaPredicted RBP21.49■■□□□ 1.03
CLSTN3-210ENST00000540931 IFIT2P09913 472 aaKnown RBP21.49■■□□□ 1.03
CLSTN3-210ENST00000540931 UQCRFS1P1P0C7P4 283 aa21.49■■□□□ 1.03
CLSTN3-210ENST00000540931 SMC1BQ8NDV3 1235 aa21.49■■□□□ 1.03
CLSTN3-210ENST00000540931 GPATCH3Q96I76 525 aa21.49■■□□□ 1.03
CLSTN3-210ENST00000540931 FAM84BQ96KN1 310 aaPredicted RBP21.49■■□□□ 1.03
CLSTN3-210ENST00000540931 IRS2Q9Y4H2 1338 aa21.49■■□□□ 1.03
CLSTN3-210ENST00000540931 ZNF609O15014 1411 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 CCDC88AQ3V6T2 1871 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 RPS12P25398 132 aaKnown RBP21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 PRELPP51888 382 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 STRIP1Q5VSL9 837 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 CIAPIN1Q6FI81 312 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 SMC5Q8IY18 1101 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 GPC2Q8N158 579 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 TBC1D22AQ8WUA7 517 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 XAGE2Q96GT9 111 aa21.48■■□□□ 1.03
CLSTN3-210ENST00000540931 USP17L3A6NCW0 530 aa21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 USP17L4A6NCW7 530 aa21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 TIMM10P62072 90 aa21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 FKBP1AP62942 108 aaKnown RBP21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 USP17L1Q7RTZ2 530 aa21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 TDRD7Q8NHU6 1098 aaKnown RBP21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 ZNF512BQ96KM6 892 aaPredicted RBP21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 DBNDD1Q9H9R9 158 aa21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 DENND2AQ9ULE3 1009 aa21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 PDS5AQ29RF7 1337 aaKnown RBP21.47■■□□□ 1.03
CLSTN3-210ENST00000540931 GLTPD2A6NH11 291 aa21.46■■□□□ 1.03
CLSTN3-210ENST00000540931 DOK7Q18PE1 504 aa21.46■■□□□ 1.03
CLSTN3-210ENST00000540931 AACSQ86V21 672 aa21.46■■□□□ 1.03
CLSTN3-210ENST00000540931 ZGPATQ8N5A5 531 aaKnown RBP21.46■■□□□ 1.03
CLSTN3-210ENST00000540931 PCNTO95613 3336 aa21.45■■□□□ 1.03
CLSTN3-210ENST00000540931 GYG1P46976 350 aa21.45■■□□□ 1.02
CLSTN3-210ENST00000540931 TXNRD3Q86VQ6 643 aa21.45■■□□□ 1.02
CLSTN3-210ENST00000540931 WDR66Q8TBY9 1149 aa21.45■■□□□ 1.02
CLSTN3-210ENST00000540931 ARAP2Q8WZ64 1704 aa21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 APBB1O00213 710 aa21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 VEGFAP15692 232 aaPredicted RBP21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 CCDC102BQ68D86 513 aa21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 TTLL5Q6EMB2 1281 aa21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 SLC51AQ86UW1 340 aa21.44■■□□□ 1.02
CLSTN3-210ENST00000540931 AGBL3Q8NEM8 1001 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms