RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 MED23Q9ULK4 1368 aa11.54□□□□□ -0.56
SNHG1-215ENST00000540904 POTEIP0CG38 1075 aa11.53□□□□□ -0.56
SNHG1-215ENST00000540904 POTEJP0CG39 1038 aa11.53□□□□□ -0.56
SNHG1-215ENST00000540904 EPS15P42566 896 aa11.53□□□□□ -0.56
SNHG1-215ENST00000540904 METTL24Q5JXM2 366 aa11.53□□□□□ -0.56
SNHG1-215ENST00000540904 SMC1BQ8NDV3 1235 aa11.53□□□□□ -0.56
SNHG1-215ENST00000540904 SPEF2Q9C093 1822 aa11.53□□□□□ -0.56
SNHG1-215ENST00000540904 GNAI2P04899 355 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 RFX5P48382 616 aaPredicted RBP11.52□□□□□ -0.57
SNHG1-215ENST00000540904 PTPN12Q05209 780 aaKnown RBP11.52□□□□□ -0.57
SNHG1-215ENST00000540904 FSTL1Q12841 308 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 PODNQ7Z5L7 613 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 PNMA8AQ86V59 439 aaPredicted RBP11.52□□□□□ -0.57
SNHG1-215ENST00000540904 PANK1Q8TE04 598 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 COA1Q9GZY4 146 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 SIL1Q9H173 461 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 GPRC5DQ9NZD1 345 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 MROH5Q6ZUA9 1318 aa11.52□□□□□ -0.57
SNHG1-215ENST00000540904 USP17L3A6NCW0 530 aa11.51□□□□□ -0.57
SNHG1-215ENST00000540904 USP17L4A6NCW7 530 aa11.51□□□□□ -0.57
SNHG1-215ENST00000540904 SRGAP3O43295 1099 aa11.51□□□□□ -0.57
SNHG1-215ENST00000540904 VIL1P09327 827 aaKnown RBP11.51□□□□□ -0.57
SNHG1-215ENST00000540904 USP17L1Q7RTZ2 530 aa11.51□□□□□ -0.57
SNHG1-215ENST00000540904 LDHDQ86WU2 507 aa11.51□□□□□ -0.57
SNHG1-215ENST00000540904 FBXW7Q969H0 707 aa11.51□□□□□ -0.57
SNHG1-215ENST00000540904 CNOT7Q9UIV1 285 aaKnown RBP11.51□□□□□ -0.57
SNHG1-215ENST00000540904 CLEC11AQ9Y240 323 aa11.51□□□□□ -0.57
SNHG1-215ENST00000540904 SHTN1A0MZ66 631 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 EYA2O00167 538 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 PDE8BO95263 885 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 MS4A1P11836 297 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 RPS12P25398 132 aaKnown RBP11.5□□□□□ -0.57
SNHG1-215ENST00000540904 UBE4AQ14139 1066 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 CHADLQ6NUI6 762 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 C15orf52Q6ZUT6 534 aaKnown RBP11.5□□□□□ -0.57
SNHG1-215ENST00000540904 ZNF804AQ7Z570 1209 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 MICALL2Q8IY33 904 aa11.5□□□□□ -0.57
SNHG1-215ENST00000540904 ADARB2Q9NS39 739 aaKnown RBP11.5□□□□□ -0.57
SNHG1-215ENST00000540904 PA2G4Q9UQ80 394 aaKnown RBP11.5□□□□□ -0.57
SNHG1-215ENST00000540904 H7C1D1 291 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 ZBTB7BO15156 539 aaPredicted RBP11.49□□□□□ -0.57
SNHG1-215ENST00000540904 HSPA6P17066 643 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 MTX1Q13505 466 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 RSBN1LQ6PCB5 846 aaPredicted RBP11.49□□□□□ -0.57
SNHG1-215ENST00000540904 USP50Q70EL3 339 aaPredicted RBP11.49□□□□□ -0.57
SNHG1-215ENST00000540904 ATG9AQ7Z3C6 839 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 VGLL2Q8N8G2 317 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 DPF2Q92785 391 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 C1orf115Q9H7X2 142 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 CD209Q9NNX6 404 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 IRS2Q9Y4H2 1338 aa11.49□□□□□ -0.57
SNHG1-215ENST00000540904 PNMA6EA0A0J9YXQ4 647 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 CIAO1O76071 339 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 GYG1P46976 350 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 GTF2IP78347 998 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 PUM3Q15397 648 aaKnown RBP11.48□□□□□ -0.57
SNHG1-215ENST00000540904 STRIP1Q5VSL9 837 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 MAP1SQ66K74 1059 aaPredicted RBP11.48□□□□□ -0.57
SNHG1-215ENST00000540904 TTLL5Q6EMB2 1281 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.48□□□□□ -0.57
SNHG1-215ENST00000540904 AGBL3Q8NEM8 1001 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 TRPM4Q8TD43 1214 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 MXD3Q9BW11 206 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 COPRSQ9NQ92 184 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 FBXO3Q9UK99 471 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 COG6Q9Y2V7 657 aa11.48□□□□□ -0.57
SNHG1-215ENST00000540904 SCN4AP35499 1836 aa11.47□□□□□ -0.57
SNHG1-215ENST00000540904 HIBADHP31937 336 aaKnown RBP11.47□□□□□ -0.57
SNHG1-215ENST00000540904 IL15P40933 162 aaPredicted RBP11.47□□□□□ -0.57
SNHG1-215ENST00000540904 MVPQ14764 893 aaKnown RBP11.47□□□□□ -0.57
SNHG1-215ENST00000540904 TBC1D10BQ4KMP7 808 aaPredicted RBP11.47□□□□□ -0.57
SNHG1-215ENST00000540904 DACT2Q5SW24 774 aa11.47□□□□□ -0.57
SNHG1-215ENST00000540904 RBM26Q5T8P6 1007 aaKnown RBP11.47□□□□□ -0.57
SNHG1-215ENST00000540904 SAMD7Q7Z3H4 446 aa11.47□□□□□ -0.57
SNHG1-215ENST00000540904 VPS37DQ86XT2 251 aa11.47□□□□□ -0.57
SNHG1-215ENST00000540904 FAM84BQ96KN1 310 aaPredicted RBP11.47□□□□□ -0.57
SNHG1-215ENST00000540904 CEP126Q9P2H0 1117 aa11.47□□□□□ -0.57
SNHG1-215ENST00000540904 EGFRP00533 1210 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 MYCNP04198 464 aaPredicted RBP11.46□□□□□ -0.57
SNHG1-215ENST00000540904 IFIT1P09914 478 aaKnown RBP11.46□□□□□ -0.57
SNHG1-215ENST00000540904 USP17L8P0C7I0 530 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 IL1R1P14778 569 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 HIRAP54198 1017 aaPredicted RBP11.46□□□□□ -0.57
SNHG1-215ENST00000540904 POLA2Q14181 598 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 CAVIN4Q5BKX8 364 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 C20orf194Q5TEA3 1177 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 CNTROBQ8N137 903 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 GMLQ99445 158 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 JAG2Q9Y219 1238 aa11.46□□□□□ -0.57
SNHG1-215ENST00000540904 SCN9AQ15858 1988 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 MYO3BQ8WXR4 1341 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 FRAT2O75474 233 aaPredicted RBP11.45□□□□□ -0.58
SNHG1-215ENST00000540904 SASH1O94885 1247 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 SLC5A1P13866 664 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 FGFR2P21802 821 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 BCAMP50895 628 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 APLP1P51693 650 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 ZNF280AP59817 542 aaPredicted RBP11.45□□□□□ -0.58
SNHG1-215ENST00000540904 ATP8B2P98198 1209 aa11.45□□□□□ -0.58
SNHG1-215ENST00000540904 ATP2B3Q16720 1220 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms