RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 BSDC1Q9NW68 430 aaPredicted RBP9.46□□□□□ -0.9
YBX3-209ENST00000540747 MINPP1Q9UNW1 487 aa9.46□□□□□ -0.9
YBX3-209ENST00000540747 SCAF8Q9UPN6 1271 aaKnown RBP9.46□□□□□ -0.9
YBX3-209ENST00000540747 MMP14P50281 582 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 GNAI1P63096 354 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 WDR43Q15061 677 aaKnown RBP eCLIP9.45□□□□□ -0.9
YBX3-209ENST00000540747 LDLRAD1Q5T700 205 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 STRIP1Q5VSL9 837 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 PRAMEF18Q5VWM3 479 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 TXNRD3Q86VQ6 643 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 CCDC85AQ96PX6 553 aaPredicted RBP9.45□□□□□ -0.9
YBX3-209ENST00000540747 CDC5LQ99459 802 aaKnown RBP9.45□□□□□ -0.9
YBX3-209ENST00000540747 MXD3Q9BW11 206 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 GREM2Q9H772 168 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 IRS2Q9Y4H2 1338 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 CENPFP49454 3210 aa9.45□□□□□ -0.9
YBX3-209ENST00000540747 BRCA2P51587 3418 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 G3V3G9 751 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 GPR25O00155 361 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 TBC1D8O95759 1140 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 CCT4P50991 539 aaKnown RBP9.44□□□□□ -0.9
YBX3-209ENST00000540747 CASP7P55210 303 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 DCAF8Q5TAQ9 597 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 KSR2Q6VAB6 950 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 TSPYL6Q8N831 410 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 COA1Q9GZY4 146 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 R3HDMLQ9H3Y0 253 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 MAP3K2Q9Y2U5 619 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 MYO3BQ8WXR4 1341 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 SSC5DA1L4H1 1573 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 LAMB1P07942 1786 aa9.44□□□□□ -0.9
YBX3-209ENST00000540747 MYH3P11055 1940 aa9.43□□□□□ -0.9
YBX3-209ENST00000540747 COL1A1P02452 1464 aaPredicted RBP9.43□□□□□ -0.9
YBX3-209ENST00000540747 H7C1W4 665 aa9.43□□□□□ -0.9
YBX3-209ENST00000540747 ELL2O00472 640 aaPredicted RBP9.43□□□□□ -0.9
YBX3-209ENST00000540747 APAF1O14727 1248 aa9.43□□□□□ -0.9
YBX3-209ENST00000540747 SASH1O94885 1247 aa9.43□□□□□ -0.9
YBX3-209ENST00000540747 KLRK1P26718 216 aa9.43□□□□□ -0.9
YBX3-209ENST00000540747 PTPN12Q05209 780 aaKnown RBP9.43□□□□□ -0.9
YBX3-209ENST00000540747 FBXO46Q6PJ61 603 aaPredicted RBP9.43□□□□□ -0.9
YBX3-209ENST00000540747 PLA2G12BQ9BX93 195 aa9.43□□□□□ -0.9
YBX3-209ENST00000540747 PI4KAP2A4QPH2 592 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 NEURL1BA8MQ27 555 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 DDX58O95786 925 aaKnown RBP9.42□□□□□ -0.9
YBX3-209ENST00000540747 CALD1Q05682 793 aaKnown RBP9.42□□□□□ -0.9
YBX3-209ENST00000540747 DDX10Q13206 875 aaKnown RBP9.42□□□□□ -0.9
YBX3-209ENST00000540747 MAP3K11Q16584 847 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 CCDC30Q5VVM6 783 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 SPRYD7Q5W111 196 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 PI4KAP1Q8N8J0 262 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 PRKRIP1Q9H875 184 aaPredicted RBP9.42□□□□□ -0.9
YBX3-209ENST00000540747 LEMD3Q9Y2U8 911 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 SPEF2Q9C093 1822 aa9.42□□□□□ -0.9
YBX3-209ENST00000540747 ZNF804BA4D1E1 1349 aa9.41□□□□□ -0.9
YBX3-209ENST00000540747 CSF1RP07333 972 aa9.41□□□□□ -0.9
YBX3-209ENST00000540747 SREBF2Q12772 1141 aa9.41□□□□□ -0.9
YBX3-209ENST00000540747 CWF19L2Q2TBE0 894 aaKnown RBP9.41□□□□□ -0.9
YBX3-209ENST00000540747 C15orf52Q6ZUT6 534 aaKnown RBP9.41□□□□□ -0.9
YBX3-209ENST00000540747 G2E3Q7L622 706 aa9.41□□□□□ -0.9
YBX3-209ENST00000540747 APOBEC3FQ8IUX4 373 aaKnown RBP9.41□□□□□ -0.9
YBX3-209ENST00000540747 OGFOD1Q8N543 542 aa9.41□□□□□ -0.9
YBX3-209ENST00000540747 CERS5Q8N5B7 392 aa9.41□□□□□ -0.9
YBX3-209ENST00000540747 MTMR14Q8NCE2 650 aa9.41□□□□□ -0.9
YBX3-209ENST00000540747 KIAA0100Q14667 2235 aaKnown RBP9.41□□□□□ -0.9
YBX3-209ENST00000540747 FKTNO75072 461 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 NF2P35240 595 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 GCKRQ14397 625 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 TTLL5Q6EMB2 1281 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 ARMC9Q7Z3E5 817 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 UBE3BQ7Z3V4 1068 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 CHMP4AQ9BY43 222 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 HDAC9Q9UKV0 1011 aa9.4□□□□□ -0.9
YBX3-209ENST00000540747 AOX1Q06278 1338 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 UNCXA6NJT0 531 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 IGF2BP3O00425 579 aaKnown RBP eCLIP9.39□□□□□ -0.91
YBX3-209ENST00000540747 ZBTB48P10074 688 aaPredicted RBP9.39□□□□□ -0.91
YBX3-209ENST00000540747 ITGA6P23229 1130 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 MKRN3Q13064 507 aaKnown RBP9.39□□□□□ -0.91
YBX3-209ENST00000540747 TTLL12Q14166 644 aaPredicted RBP9.39□□□□□ -0.91
YBX3-209ENST00000540747 KIAA0825Q8IV33 1275 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 TSR2Q969E8 191 aaKnown RBP9.39□□□□□ -0.91
YBX3-209ENST00000540747 ANKRD2Q9GZV1 360 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 DEFB129Q9H1M3 183 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 CD209Q9NNX6 404 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 FZD1Q9UP38 647 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 PCDHAC2Q9Y5I4 1007 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 A0A1B0GUL6 1792 aa9.39□□□□□ -0.91
YBX3-209ENST00000540747 RBBP6Q7Z6E9 1792 aaKnown RBP9.38□□□□□ -0.91
YBX3-209ENST00000540747 CEP290O15078 2479 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 MANSC4A6NHS7 340 aaPredicted RBP9.38□□□□□ -0.91
YBX3-209ENST00000540747 SNAP23O00161 211 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 ALDH1A1P00352 501 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 IL1R1P14778 569 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 GJA5P36382 358 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 IGHMBP2P38935 993 aaKnown RBP9.38□□□□□ -0.91
YBX3-209ENST00000540747 FKBP1AP62942 108 aaKnown RBP9.38□□□□□ -0.91
YBX3-209ENST00000540747 GTF2IP78347 998 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 CAP1Q01518 475 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 CHRNDQ07001 517 aa9.38□□□□□ -0.91
YBX3-209ENST00000540747 NEXNQ0ZGT2 675 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms