RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 HELBQ8NG08 1087 aaPredicted RBP9.19□□□□□ -0.94
LMO3-220ENST00000539232 JDP2Q8WYK2 163 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 CHMP4AQ9BY43 222 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 PUS3Q9BZE2 481 aaKnown RBP9.19□□□□□ -0.94
LMO3-220ENST00000539232 SMC4Q9NTJ3 1288 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 HDAC9Q9UKV0 1011 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 ZNRF3Q9ULT6 936 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 NOB1Q9ULX3 412 aaKnown RBP9.19□□□□□ -0.94
LMO3-220ENST00000539232 MINPP1Q9UNW1 487 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 ZBTB12Q9Y330 459 aaPredicted RBP9.19□□□□□ -0.94
LMO3-220ENST00000539232 RTL9Q8NET4 1388 aa9.19□□□□□ -0.94
LMO3-220ENST00000539232 FAM155AB1AL88 458 aaPredicted RBP9.18□□□□□ -0.94
LMO3-220ENST00000539232 GRM8O00222 908 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 BCAR3O75815 825 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 HIRAP54198 1017 aaPredicted RBP9.18□□□□□ -0.94
LMO3-220ENST00000539232 EIF6P56537 245 aaKnown RBP9.18□□□□□ -0.94
LMO3-220ENST00000539232 HUNKP57058 714 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 KIF23Q02241 960 aaPredicted RBP9.18□□□□□ -0.94
LMO3-220ENST00000539232 ANKRD18AQ8IVF6 992 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 CCDC102AQ96A19 550 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 MXD3Q9BW11 206 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 SRCIN1Q9C0H9 1055 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 USP44Q9H0E7 712 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 PODXL2Q9NZ53 605 aa9.18□□□□□ -0.94
LMO3-220ENST00000539232 PSMD14O00487 310 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 TAF5LO75529 589 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 ALDH1L1O75891 902 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 WASHC4Q2M389 1173 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 RGMBQ6NW40 437 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 KLHDC4Q8TBB5 520 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 TRPM4Q8TD43 1214 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 ZNF408Q9H9D4 720 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 BSDC1Q9NW68 430 aaPredicted RBP9.17□□□□□ -0.94
LMO3-220ENST00000539232 ANKIB1Q9P2G1 1089 aa9.17□□□□□ -0.94
LMO3-220ENST00000539232 RBBP6Q7Z6E9 1792 aaKnown RBP9.17□□□□□ -0.94
LMO3-220ENST00000539232 UTYO14607 1347 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 ASTN2O75129 1339 aaPredicted RBP9.16□□□□□ -0.94
LMO3-220ENST00000539232 IRS2Q9Y4H2 1338 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 ECE2O60344 883 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 GRIPAP1Q4V328 841 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 INTS3Q68E01 1043 aaKnown RBP9.16□□□□□ -0.94
LMO3-220ENST00000539232 TMC4Q7Z404 712 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 REM2Q8IYK8 340 aaPredicted RBP9.16□□□□□ -0.94
LMO3-220ENST00000539232 SUPT20HQ8NEM7 779 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 OTUD5Q96G74 571 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 GLIS2Q9BZE0 524 aaPredicted RBP9.16□□□□□ -0.94
LMO3-220ENST00000539232 BICC1Q9H694 974 aaKnown RBP9.16□□□□□ -0.94
LMO3-220ENST00000539232 ADARB2Q9NS39 739 aaKnown RBP9.16□□□□□ -0.94
LMO3-220ENST00000539232 GPRC5DQ9NZD1 345 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 GGA1Q9UJY5 639 aa9.16□□□□□ -0.94
LMO3-220ENST00000539232 DDX60Q8IY21 1712 aaKnown RBP9.15□□□□□ -0.94
LMO3-220ENST00000539232 CHRNDQ07001 517 aa9.15□□□□□ -0.94
LMO3-220ENST00000539232 ALDH1L2Q3SY69 923 aa9.15□□□□□ -0.94
LMO3-220ENST00000539232 CSRNP1Q96S65 589 aa9.15□□□□□ -0.94
LMO3-220ENST00000539232 CDC5LQ99459 802 aaKnown RBP9.15□□□□□ -0.94
LMO3-220ENST00000539232 TMX4Q9H1E5 349 aaPredicted RBP9.15□□□□□ -0.94
LMO3-220ENST00000539232 C9orf78Q9NZ63 289 aaPredicted RBP9.15□□□□□ -0.94
LMO3-220ENST00000539232 PGAP2Q9UHJ9 254 aa9.15□□□□□ -0.94
LMO3-220ENST00000539232 CHMP3Q9Y3E7 222 aa9.15□□□□□ -0.94
LMO3-220ENST00000539232 PTPRCP08575 1304 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 XDHP47989 1333 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 POTEFA5A3E0 1075 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 CCT4P50991 539 aaKnown RBP9.14□□□□□ -0.95
LMO3-220ENST00000539232 RABL6Q3YEC7 729 aaPredicted RBP9.14□□□□□ -0.95
LMO3-220ENST00000539232 LRRC24Q50LG9 513 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 CDC37L1Q7L3B6 337 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 SAMD7Q7Z3H4 446 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 MICALL2Q8IY33 904 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 ZC3H15Q8WU90 426 aaKnown RBP9.14□□□□□ -0.95
LMO3-220ENST00000539232 ZNF296Q8WUU4 475 aaPredicted RBP9.14□□□□□ -0.95
LMO3-220ENST00000539232 MEIS3Q99687 375 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 VPS33BQ9H267 617 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 PAPPA2Q9BXP8 1791 aa9.14□□□□□ -0.95
LMO3-220ENST00000539232 TAF1P21675 1872 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 ANKRD18BA2A2Z9 1011 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 PLIN1O60240 522 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 VIL1P09327 827 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 RLBP1P12271 317 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 TRIM27P14373 513 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 HSP90B1P14625 803 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 ATP2B4P23634 1241 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 IGHMBP2P38935 993 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 RFX5P48382 616 aaPredicted RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 ZNF157P51786 506 aaPredicted RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 IFIT5Q13325 482 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 TBC1D10BQ4KMP7 808 aaPredicted RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 NOM1Q5C9Z4 860 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 CLUAP1Q96AJ1 413 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 GMLQ99445 158 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 COL25A1Q9BXS0 654 aaPredicted RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 ZC3H12CQ9C0D7 883 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 CNOT7Q9UIV1 285 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 SCAF8Q9UPN6 1271 aaKnown RBP9.13□□□□□ -0.95
LMO3-220ENST00000539232 JAG2Q9Y219 1238 aa9.13□□□□□ -0.95
LMO3-220ENST00000539232 LAMB2P55268 1798 aa9.12□□□□□ -0.95
LMO3-220ENST00000539232 ANKRD36CQ5JPF3 1778 aa9.12□□□□□ -0.95
LMO3-220ENST00000539232 ZNF804BA4D1E1 1349 aa9.12□□□□□ -0.95
LMO3-220ENST00000539232 RBM26Q5T8P6 1007 aaKnown RBP9.12□□□□□ -0.95
LMO3-220ENST00000539232 FRAT1Q92837 279 aaPredicted RBP9.12□□□□□ -0.95
LMO3-220ENST00000539232 EYA3Q99504 573 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms