RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 NLRP2Q9NX02 1062 aa6.67□□□□□ -1.34
CD44-233ENST00000531141 A0A1W2PP55 124 aa6.66□□□□□ -1.34
CD44-233ENST00000531141 PDE2AO00408 941 aaPredicted RBP6.66□□□□□ -1.34
CD44-233ENST00000531141 GNB5O14775 395 aa6.66□□□□□ -1.34
CD44-233ENST00000531141 PTPRAP18433 802 aa6.66□□□□□ -1.34
CD44-233ENST00000531141 KIAA0319Q5VV43 1072 aa6.66□□□□□ -1.34
CD44-233ENST00000531141 CEP135Q66GS9 1140 aa6.66□□□□□ -1.34
CD44-233ENST00000531141 PRPF40BQ6NWY9 871 aaKnown RBP6.66□□□□□ -1.34
CD44-233ENST00000531141 SUV39H2Q9H5I1 410 aa6.66□□□□□ -1.34
CD44-233ENST00000531141 NFKBIEO00221 500 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 GADD45BO75293 160 aaPredicted RBP6.65□□□□□ -1.34
CD44-233ENST00000531141 NID1P14543 1247 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 IRS1P35568 1242 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 AFF1P51825 1210 aaKnown RBP6.65□□□□□ -1.34
CD44-233ENST00000531141 GRIK5Q16478 980 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 SCARF2Q96GP6 870 aaPredicted RBP6.65□□□□□ -1.34
CD44-233ENST00000531141 BCL2L13Q9BXK5 485 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 LIN7BQ9HAP6 207 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 ADAMTS8Q9UP79 889 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 TRIM33Q9UPN9 1127 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 TRAK1Q9UPV9 953 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 SPG7Q9UQ90 795 aa6.65□□□□□ -1.34
CD44-233ENST00000531141 SPDYE3A6NKU9 549 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 FAM177BA6PVY3 158 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 RNF225M0QZC1 329 aaPredicted RBP6.64□□□□□ -1.35
CD44-233ENST00000531141 GSK3AP49840 483 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 SNRPNP63162 240 aaKnown RBP6.64□□□□□ -1.35
CD44-233ENST00000531141 WFDC8Q8IUA0 241 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 CCNJLQ8IV13 435 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 EPS8L3Q8TE67 593 aaKnown RBP6.64□□□□□ -1.35
CD44-233ENST00000531141 FRMD6Q96NE9 622 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 HHIPQ96QV1 700 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 SETDB2Q96T68 719 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 EHD4Q9H223 541 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 NOP53Q9NZM5 478 aaKnown RBP6.64□□□□□ -1.35
CD44-233ENST00000531141 WWC3Q9ULE0 1092 aa6.64□□□□□ -1.35
CD44-233ENST00000531141 GIPC1O14908 333 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 GNA15P30679 374 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 ITGAEP38570 1179 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 COL9A3Q14050 684 aaPredicted RBP6.63□□□□□ -1.35
CD44-233ENST00000531141 GRM2Q14416 872 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.63□□□□□ -1.35
CD44-233ENST00000531141 MSL1Q68DK7 614 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 GDF6Q6KF10 455 aaPredicted RBP6.63□□□□□ -1.35
CD44-233ENST00000531141 LINC00114Q6XXX2 140 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 C8orf86Q6ZUL3 223 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 GIPC2Q8TF65 315 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 NXPE3Q969Y0 559 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 TCF12Q99081 682 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 SRCIN1Q9C0H9 1055 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 ADAM19Q9H013 955 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 BCL11AQ9H165 835 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 MUC3BQ9H195 1237 aa6.63□□□□□ -1.35
CD44-233ENST00000531141 CDC27P30260 824 aa6.62□□□□□ -1.35
CD44-233ENST00000531141 PI16Q6UXB8 463 aa6.62□□□□□ -1.35
CD44-233ENST00000531141 BEND7Q8N7W2 519 aaPredicted RBP6.62□□□□□ -1.35
CD44-233ENST00000531141 RGS22Q8NE09 1264 aa6.62□□□□□ -1.35
CD44-233ENST00000531141 TRIM11Q96F44 468 aa6.62□□□□□ -1.35
CD44-233ENST00000531141 POP1Q99575 1024 aaKnown RBP6.62□□□□□ -1.35
CD44-233ENST00000531141 DUSP9Q99956 384 aaKnown RBP6.62□□□□□ -1.35
CD44-233ENST00000531141 LACRTQ9GZZ8 138 aa6.62□□□□□ -1.35
CD44-233ENST00000531141 SRA1Q9HD15 236 aaKnown RBP6.62□□□□□ -1.35
CD44-233ENST00000531141 ABCB6Q9NP58 842 aa6.62□□□□□ -1.35
CD44-233ENST00000531141 SOX13Q9UN79 622 aa6.62□□□□□ -1.35
CD44-233ENST00000531141 TRPA1O75762 1119 aa6.61□□□□□ -1.35
CD44-233ENST00000531141 CABP4P57796 275 aa6.61□□□□□ -1.35
CD44-233ENST00000531141 ZNF326Q5BKZ1 582 aaKnown RBP6.61□□□□□ -1.35
CD44-233ENST00000531141 DTWD1Q8N5C7 304 aa6.61□□□□□ -1.35
CD44-233ENST00000531141 GLIS3Q8NEA6 775 aa6.61□□□□□ -1.35
CD44-233ENST00000531141 ASAP3Q8TDY4 903 aa6.61□□□□□ -1.35
CD44-233ENST00000531141 BSNDQ8WZ55 320 aa6.61□□□□□ -1.35
CD44-233ENST00000531141 BCO2Q9BYV7 579 aa6.61□□□□□ -1.35
CD44-233ENST00000531141 H3BRJ5 948 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 XRCC5P13010 732 aaKnown RBP6.6□□□□□ -1.35
CD44-233ENST00000531141 EPHA1P21709 976 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 ITPKAP23677 461 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 BAG6P46379 1132 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 RAC1P63000 192 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 PTPN12Q05209 780 aaKnown RBP6.6□□□□□ -1.35
CD44-233ENST00000531141 MAP4K3Q8IVH8 894 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 TMEM151AQ8N4L1 468 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 IL22RA1Q8N6P7 574 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 DCAF11Q8TEB1 546 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 C12orf49Q9H741 205 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 PPME1Q9Y570 386 aa6.6□□□□□ -1.35
CD44-233ENST00000531141 CNTNAP5Q8WYK1 1306 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 A0A096LPE4 126 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 A0A1W2PPZ6 126 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 RBM47A0AV96 593 aaKnown RBP6.59□□□□□ -1.35
CD44-233ENST00000531141 METTL12A8MUP2 240 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 GSTT1P30711 240 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 GRIA4P48058 902 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 XPCQ01831 940 aaPredicted RBP6.59□□□□□ -1.35
CD44-233ENST00000531141 PSMD2Q13200 908 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 FAM117BQ6P1L5 589 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 ILDR2Q71H61 639 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 TMC4Q7Z404 712 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 ALYREFQ86V81 257 aaKnown RBP6.59□□□□□ -1.35
CD44-233ENST00000531141 WNT8BQ93098 351 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 PLVAPQ9BX97 442 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms