RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 PNISRQ8TF01 805 aaKnown RBP4.65□□□□□ -1.66
PTPRC-213ENST00000529828 XAGE3Q8WTP9 111 aa4.65□□□□□ -1.66
PTPRC-213ENST00000529828 CELF1Q92879 486 aaKnown RBP4.65□□□□□ -1.66
PTPRC-213ENST00000529828 CCDC102AQ96A19 550 aa4.65□□□□□ -1.66
PTPRC-213ENST00000529828 VPS33BQ9H267 617 aa4.65□□□□□ -1.66
PTPRC-213ENST00000529828 POLLQ9UGP5 575 aa4.65□□□□□ -1.66
PTPRC-213ENST00000529828 TSPYL4Q9UJ04 414 aa4.65□□□□□ -1.66
PTPRC-213ENST00000529828 TAF1P21675 1872 aa4.65□□□□□ -1.67
PTPRC-213ENST00000529828 LAMB2P55268 1798 aa4.65□□□□□ -1.67
PTPRC-213ENST00000529828 HOXB1P14653 301 aaPredicted RBP4.64□□□□□ -1.67
PTPRC-213ENST00000529828 KRT24Q2M2I5 525 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 PRAMEF18Q5VWM3 479 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 COPS6Q7L5N1 327 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 SULF1Q8IWU6 871 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 ZNF710Q8N1W2 664 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 ZNF296Q8WUU4 475 aaPredicted RBP4.64□□□□□ -1.67
PTPRC-213ENST00000529828 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.64□□□□□ -1.67
PTPRC-213ENST00000529828 HDAC9Q9UKV0 1011 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 SH3TC1Q8TE82 1336 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 A0A0C4DFX4 3053 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 ATP5J2-PTCD1G3V325 749 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 NEFMP07197 916 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 NFE2L2Q16236 605 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 ANGEL2Q5VTE6 544 aaKnown RBP4.64□□□□□ -1.67
PTPRC-213ENST00000529828 DPF2Q92785 391 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 FAM89AQ96GI7 184 aa4.64□□□□□ -1.67
PTPRC-213ENST00000529828 DLG5Q8TDM6 1919 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 UBE2Q2LH0YL09 131 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 SCARF1Q14162 830 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 PDCD7Q8N8D1 485 aaKnown RBP4.63□□□□□ -1.67
PTPRC-213ENST00000529828 ERBB4Q15303 1308 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 LRRC37AA6NMS7 1700 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 UFL1O94874 794 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 RPS12P25398 132 aaKnown RBP4.63□□□□□ -1.67
PTPRC-213ENST00000529828 TCIRG1Q13488 830 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 PRKG1Q13976 671 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 TTLL12Q14166 644 aaPredicted RBP4.63□□□□□ -1.67
PTPRC-213ENST00000529828 HSP90AB3PQ58FF7 597 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 TBC1D16Q8TBP0 767 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 CCDC85AQ96PX6 553 aaPredicted RBP4.63□□□□□ -1.67
PTPRC-213ENST00000529828 PLEKHF1Q96S99 279 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 R3HDMLQ9H3Y0 253 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 LAMA3Q16787 3333 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 MAPK8IP3Q9UPT6 1336 aa4.63□□□□□ -1.67
PTPRC-213ENST00000529828 POLR2AP24928 1970 aaKnown RBP4.63□□□□□ -1.67
PTPRC-213ENST00000529828 PRKCSHP14314 528 aaPredicted RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 JARID2Q92833 1246 aaPredicted RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 EYA3Q99504 573 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 MXD3Q9BW11 206 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 SEC31BQ9NQW1 1179 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 CHPF2Q9P2E5 772 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 FZD1Q9UP38 647 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 DDX60Q8IY21 1712 aaKnown RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 ANKRD36CQ5JPF3 1778 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 AKAP11Q9UKA4 1901 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 SCN9AQ15858 1988 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 VIL1P09327 827 aaKnown RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 RSBN1LQ6PCB5 846 aaPredicted RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 TMC4Q7Z404 712 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 ZNF467Q7Z7K2 595 aaPredicted RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 FBXW7Q969H0 707 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 ZC3H12CQ9C0D7 883 aaKnown RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 MYOZ2Q9NPC6 264 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 ANKIB1Q9P2G1 1089 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 LAS1LQ9Y4W2 734 aaKnown RBP4.62□□□□□ -1.67
PTPRC-213ENST00000529828 CEP290O15078 2479 aa4.62□□□□□ -1.67
PTPRC-213ENST00000529828 PAPPA2Q9BXP8 1791 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 WTIPA6NIX2 430 aaPredicted RBP4.61□□□□□ -1.67
PTPRC-213ENST00000529828 GPR25O00155 361 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 IRS4O14654 1257 aaPredicted RBP4.61□□□□□ -1.67
PTPRC-213ENST00000529828 SASH1O94885 1247 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 RIPK4P57078 832 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 NEUROD2Q15784 382 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 NBPF9Q3BBW0 867 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 HABP4Q5JVS0 413 aaKnown RBP4.61□□□□□ -1.67
PTPRC-213ENST00000529828 GGA1Q9UJY5 639 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 ZNF280AP59817 542 aaPredicted RBP4.61□□□□□ -1.67
PTPRC-213ENST00000529828 RPS8P62241 208 aaKnown RBP4.61□□□□□ -1.67
PTPRC-213ENST00000529828 SF3B3Q15393 1217 aaKnown RBP4.61□□□□□ -1.67
PTPRC-213ENST00000529828 FBXO46Q6PJ61 603 aaPredicted RBP4.61□□□□□ -1.67
PTPRC-213ENST00000529828 ISCA1Q9BUE6 129 aa4.61□□□□□ -1.67
PTPRC-213ENST00000529828 COL6A3P12111 3177 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 FKTNO75072 461 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 USP17L8P0C7I0 530 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 FKBP1BP68106 108 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 PTPN12Q05209 780 aaKnown RBP4.6□□□□□ -1.67
PTPRC-213ENST00000529828 PKN2Q16513 984 aaKnown RBP4.6□□□□□ -1.67
PTPRC-213ENST00000529828 HDGFL1Q5TGJ6 251 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 CCDC146Q8IYE0 955 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 PLBD2Q8NHP8 589 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 TRIM17Q9Y577 477 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 TRIOBPQ9H2D6 2365 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 ANKRD13DQ6ZTN6 518 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 AGBL3Q8NEM8 1001 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 GMLQ99445 158 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 ZSWIM6Q9HCJ5 1215 aa4.6□□□□□ -1.67
PTPRC-213ENST00000529828 USP17L3A6NCW0 530 aa4.59□□□□□ -1.67
PTPRC-213ENST00000529828 USP17L4A6NCW7 530 aa4.59□□□□□ -1.67
PTPRC-213ENST00000529828 MYCP01106 439 aaPredicted RBP4.59□□□□□ -1.67
PTPRC-213ENST00000529828 HOXB3P14651 431 aaPredicted RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms