RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 SPINK5Q9NQ38 1064 aaPredicted RBP16.56■□□□□ 0.24
CPSF1-204ENST00000529288 HHIPL1Q96JK4 782 aa16.55■□□□□ 0.24
CPSF1-204ENST00000529288 MYOZ2Q9NPC6 264 aa16.55■□□□□ 0.24
CPSF1-204ENST00000529288 SCAF8Q9UPN6 1271 aaKnown RBP16.55■□□□□ 0.24
CPSF1-204ENST00000529288 ZNF280AP59817 542 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-204ENST00000529288 CDCA5Q96FF9 252 aa16.54■□□□□ 0.24
CPSF1-204ENST00000529288 ZIC5Q96T25 663 aa16.54■□□□□ 0.24
CPSF1-204ENST00000529288 PLA2G12BQ9BX93 195 aa16.54■□□□□ 0.24
CPSF1-204ENST00000529288 ANKRD2Q9GZV1 360 aa16.54■□□□□ 0.24
CPSF1-204ENST00000529288 LEMD3Q9Y2U8 911 aa16.54■□□□□ 0.24
CPSF1-204ENST00000529288 MED23Q9ULK4 1368 aa16.53■□□□□ 0.24
CPSF1-204ENST00000529288 ZNF804BA4D1E1 1349 aa16.53■□□□□ 0.24
CPSF1-204ENST00000529288 ANKRD18BA2A2Z9 1011 aa16.53■□□□□ 0.24
CPSF1-204ENST00000529288 ZNF157P51786 506 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-204ENST00000529288 CASP7P55210 303 aa16.53■□□□□ 0.24
CPSF1-204ENST00000529288 RGMBQ6NW40 437 aa16.53■□□□□ 0.24
CPSF1-204ENST00000529288 TXNRD3Q86VQ6 643 aa16.53■□□□□ 0.24
CPSF1-204ENST00000529288 COA1Q9GZY4 146 aa16.53■□□□□ 0.24
CPSF1-204ENST00000529288 TRPM7Q96QT4 1865 aa16.52■□□□□ 0.24
CPSF1-204ENST00000529288 CSF1RP07333 972 aa16.52■□□□□ 0.24
CPSF1-204ENST00000529288 KLRK1P26718 216 aa16.52■□□□□ 0.24
CPSF1-204ENST00000529288 NOGQ13253 232 aa16.52■□□□□ 0.24
CPSF1-204ENST00000529288 SLC4A10Q6U841 1118 aa16.52■□□□□ 0.24
CPSF1-204ENST00000529288 HELBQ8NG08 1087 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-204ENST00000529288 GMLQ99445 158 aa16.52■□□□□ 0.24
CPSF1-204ENST00000529288 TAF5LO75529 589 aa16.51■□□□□ 0.23
CPSF1-204ENST00000529288 BRPF1P55201 1214 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-204ENST00000529288 CHRNDQ07001 517 aa16.51■□□□□ 0.23
CPSF1-204ENST00000529288 IFIT5Q13325 482 aaKnown RBP16.51■□□□□ 0.23
CPSF1-204ENST00000529288 TAF7LQ5H9L4 462 aa16.51■□□□□ 0.23
CPSF1-204ENST00000529288 DACT2Q5SW24 774 aa16.51■□□□□ 0.23
CPSF1-204ENST00000529288 BEND3Q5T5X7 828 aa16.51■□□□□ 0.23
CPSF1-204ENST00000529288 OGFOD1Q8N543 542 aa16.51■□□□□ 0.23
CPSF1-204ENST00000529288 SNAP23O00161 211 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 CA12O43570 354 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 PLIN1O60240 522 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 GTF2IP78347 998 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 KIF23Q02241 960 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-204ENST00000529288 NBPF9Q3BBW0 867 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 PRAMEF18Q5VWM3 479 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 TTLL5Q6EMB2 1281 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 CCDC102AQ96A19 550 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 ABHD8Q96I13 439 aa16.5■□□□□ 0.23
CPSF1-204ENST00000529288 C9orf78Q9NZ63 289 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-204ENST00000529288 FOXO4P98177 505 aa16.49■□□□□ 0.23
CPSF1-204ENST00000529288 TTLL12Q14166 644 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-204ENST00000529288 STRIP1Q5VSL9 837 aa16.49■□□□□ 0.23
CPSF1-204ENST00000529288 LMBR1LQ6UX01 489 aa16.49■□□□□ 0.23
CPSF1-204ENST00000529288 SCN9AQ15858 1988 aa16.48■□□□□ 0.23
CPSF1-204ENST00000529288 SASH1O94885 1247 aa16.48■□□□□ 0.23
CPSF1-204ENST00000529288 CCDC57Q2TAC2 916 aa16.48■□□□□ 0.23
CPSF1-204ENST00000529288 KIAA0825Q8IV33 1275 aa16.48■□□□□ 0.23
CPSF1-204ENST00000529288 ZNF594Q96JF6 807 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-204ENST00000529288 HDAC9Q9UKV0 1011 aa16.48■□□□□ 0.23
CPSF1-204ENST00000529288 MYO3BQ8WXR4 1341 aa16.47■□□□□ 0.23
CPSF1-204ENST00000529288 CCDC85CA6NKD9 419 aa16.47■□□□□ 0.23
CPSF1-204ENST00000529288 FAM155AB1AL88 458 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-204ENST00000529288 GRM8O00222 908 aa16.47■□□□□ 0.23
CPSF1-204ENST00000529288 EPHA10Q5JZY3 1008 aa16.47■□□□□ 0.23
CPSF1-204ENST00000529288 MOB2Q70IA6 237 aa16.47■□□□□ 0.23
CPSF1-204ENST00000529288 CD209Q9NNX6 404 aa16.47■□□□□ 0.23
CPSF1-204ENST00000529288 CNNM1Q9NRU3 951 aa16.47■□□□□ 0.23
CPSF1-204ENST00000529288 UBE2Q2LH0YL09 131 aa16.46■□□□□ 0.23
CPSF1-204ENST00000529288 WNT10BO00744 389 aa16.46■□□□□ 0.23
CPSF1-204ENST00000529288 LDHAL6AQ6ZMR3 332 aa16.46■□□□□ 0.23
CPSF1-204ENST00000529288 SRCIN1Q9C0H9 1055 aa16.46■□□□□ 0.23
CPSF1-204ENST00000529288 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-204ENST00000529288 JAG2Q9Y219 1238 aa16.46■□□□□ 0.23
CPSF1-204ENST00000529288 PITPNM2Q9BZ72 1349 aa16.45■□□□□ 0.22
CPSF1-204ENST00000529288 ZNF609O15014 1411 aa16.45■□□□□ 0.22
CPSF1-204ENST00000529288 THSD7BQ9C0I4 1608 aa16.45■□□□□ 0.22
CPSF1-204ENST00000529288 F8W031 263 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-204ENST00000529288 PRKG1Q13976 671 aa16.45■□□□□ 0.22
CPSF1-204ENST00000529288 SPEF2Q9C093 1822 aa16.45■□□□□ 0.22
CPSF1-204ENST00000529288 TRPA1O75762 1119 aa16.44■□□□□ 0.22
CPSF1-204ENST00000529288 ALDH1L1O75891 902 aa16.44■□□□□ 0.22
CPSF1-204ENST00000529288 SLC10A3P09131 477 aa16.44■□□□□ 0.22
CPSF1-204ENST00000529288 NF2P35240 595 aa16.44■□□□□ 0.22
CPSF1-204ENST00000529288 ZNF804AQ7Z570 1209 aa16.44■□□□□ 0.22
CPSF1-204ENST00000529288 DGKZQ13574 1117 aa16.43■□□□□ 0.22
CPSF1-204ENST00000529288 DLGAP5Q15398 846 aa16.43■□□□□ 0.22
CPSF1-204ENST00000529288 RASAL3Q86YV0 1011 aa16.43■□□□□ 0.22
CPSF1-204ENST00000529288 SUCLG2Q96I99 432 aa16.43■□□□□ 0.22
CPSF1-204ENST00000529288 RNF186Q9NXI6 227 aa16.43■□□□□ 0.22
CPSF1-204ENST00000529288 FKBP1BP68106 108 aa16.42■□□□□ 0.22
CPSF1-204ENST00000529288 MKRN3Q13064 507 aaKnown RBP16.42■□□□□ 0.22
CPSF1-204ENST00000529288 CSRNP1Q96S65 589 aa16.42■□□□□ 0.22
CPSF1-204ENST00000529288 MCOLN1Q9GZU1 580 aa16.42■□□□□ 0.22
CPSF1-204ENST00000529288 RBM5P52756 815 aaKnown RBP eCLIP16.41■□□□□ 0.221e-7■□□□□ 9
CPSF1-204ENST00000529288 MRPL50Q8N5N7 158 aaKnown RBP16.41■□□□□ 0.22
CPSF1-204ENST00000529288 MYH3P11055 1940 aa16.41■□□□□ 0.22
CPSF1-204ENST00000529288 NBPF7P0C2Y1 421 aaPredicted RBP16.4■□□□□ 0.22
CPSF1-204ENST00000529288 MMP14P50281 582 aa16.4■□□□□ 0.22
CPSF1-204ENST00000529288 APOBEC3FQ8IUX4 373 aaKnown RBP16.4■□□□□ 0.22
CPSF1-204ENST00000529288 CERS5Q8N5B7 392 aa16.4■□□□□ 0.22
CPSF1-204ENST00000529288 PUS3Q9BZE2 481 aaKnown RBP16.4■□□□□ 0.22
CPSF1-204ENST00000529288 POLR2AP24928 1970 aaKnown RBP16.4■□□□□ 0.22
CPSF1-204ENST00000529288 CLRN2A0PK11 232 aa16.39■□□□□ 0.21
CPSF1-204ENST00000529288 CFAP100Q494V2 611 aa16.39■□□□□ 0.21
CPSF1-204ENST00000529288 C15orf52Q6ZUT6 534 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms