RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 OSBPL7Q9BZF2 842 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 SUV39H2Q9H5I1 410 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 NPHS2Q9NP85 383 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 DNAJB12Q9NXW2 375 aaKnown RBP5.24□□□□□ -1.57
CD44-229ENST00000528672 PARP2Q9UGN5 583 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 NAGPAQ9UK23 515 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 STARD13Q9Y3M8 1113 aa5.24□□□□□ -1.57
CD44-229ENST00000528672 LILRB5O75023 590 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 PSAPP07602 524 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 ENOX2Q16206 610 aaKnown RBP5.23□□□□□ -1.57
CD44-229ENST00000528672 PEAR1Q5VY43 1037 aaPredicted RBP5.23□□□□□ -1.57
CD44-229ENST00000528672 C9orf131Q5VYM1 1079 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 CD163Q86VB7 1156 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 MICALL1Q8N3F8 863 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 OR13H1Q8NG92 308 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 CSRNP1Q96S65 589 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 ZFYVE28Q9HCC9 887 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 SALL4Q9UJQ4 1053 aa5.23□□□□□ -1.57
CD44-229ENST00000528672 F6X3S4 739 aa5.22□□□□□ -1.57
CD44-229ENST00000528672 M0R082 166 aa5.22□□□□□ -1.57
CD44-229ENST00000528672 ALBP02768 609 aa5.22□□□□□ -1.57
CD44-229ENST00000528672 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.22□□□□□ -1.57
CD44-229ENST00000528672 EAPPQ56P03 285 aaPredicted RBP5.22□□□□□ -1.57
CD44-229ENST00000528672 ZSCAN29Q8IWY8 852 aaPredicted RBP5.22□□□□□ -1.57
CD44-229ENST00000528672 DTWD1Q8N5C7 304 aa5.22□□□□□ -1.57
CD44-229ENST00000528672 ZNF417Q8TAU3 575 aa5.22□□□□□ -1.57
CD44-229ENST00000528672 CCDC74AQ96AQ1 378 aa5.22□□□□□ -1.57
CD44-229ENST00000528672 MRRFQ96E11 262 aaKnown RBP5.22□□□□□ -1.57
CD44-229ENST00000528672 CITED4Q96RK1 184 aa5.22□□□□□ -1.57
CD44-229ENST00000528672 ZNF587Q96SQ5 575 aaPredicted RBP5.22□□□□□ -1.57
CD44-229ENST00000528672 PHACTR2O75167 634 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 CTSHP09668 335 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 SPATA31C1P0DKV0 1188 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 NID1P14543 1247 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 COL9A3Q14050 684 aaPredicted RBP5.21□□□□□ -1.58
CD44-229ENST00000528672 HGSNATQ68CP4 663 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 ILDR2Q71H61 639 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 DCAF11Q8TEB1 546 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 PMEPA1Q969W9 287 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 RBSNQ9H1K0 784 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 SEMA6BQ9H3T3 888 aa5.21□□□□□ -1.58
CD44-229ENST00000528672 SRA1Q9HD15 236 aaKnown RBP5.21□□□□□ -1.58
CD44-229ENST00000528672 ABI2Q9NYB9 513 aaPredicted RBP5.21□□□□□ -1.58
CD44-229ENST00000528672 RBAK-RBAKDNI3L0D1 243 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 KIF4AO95239 1232 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 CPB1P15086 417 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 SPRED3Q2MJR0 410 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 ZNF326Q5BKZ1 582 aaKnown RBP5.2□□□□□ -1.58
CD44-229ENST00000528672 PSAPL1Q6NUJ1 521 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 NXPE4Q6UWF7 544 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 FAM35AQ86V20 835 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 TTC16Q8NEE8 873 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 ALKBH8Q96BT7 664 aaKnown RBP5.2□□□□□ -1.58
CD44-229ENST00000528672 TRIM11Q96F44 468 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 LPIN3Q9BQK8 851 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 USP35Q9P2H5 1018 aa5.2□□□□□ -1.58
CD44-229ENST00000528672 A0A1W2PP55 124 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 FBXO24O75426 580 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 RGS9O75916 674 aaPredicted RBP5.19□□□□□ -1.58
CD44-229ENST00000528672 RECKO95980 971 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 CES1P23141 567 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 CDC25BP30305 580 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 CHRNA4P43681 627 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 PRRT3Q5FWE3 981 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 ZMYM1Q5SVZ6 1142 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 MEI1Q5TIA1 1274 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 TTC39BQ5VTQ0 682 aaPredicted RBP5.19□□□□□ -1.58
CD44-229ENST00000528672 MAP4K3Q8IVH8 894 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 GLIS3Q8NEA6 775 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 DMRTB1Q96MA1 342 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 ZKSCAN3Q9BRR0 538 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 RASSF4Q9H2L5 321 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 JPH1Q9HDC5 661 aaPredicted RBP5.19□□□□□ -1.58
CD44-229ENST00000528672 IGSF5Q9NSI5 407 aa5.19□□□□□ -1.58
CD44-229ENST00000528672 LOC102724428A0A0B4J2F2 783 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 NFKBIEO00221 500 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 CPNE3O75131 537 aaKnown RBP5.18□□□□□ -1.58
CD44-229ENST00000528672 GHRHP01286 108 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 GRIA4P48058 902 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 AFF1P51825 1210 aaKnown RBP5.18□□□□□ -1.58
CD44-229ENST00000528672 SIK1P57059 783 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 HYAL2Q12891 473 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 DOC2BQ14184 412 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 GRM2Q14416 872 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 TSNAXIP1Q2TAA8 658 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 PERM1Q5SV97 790 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 ELMSAN1Q6PJG2 1045 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 SNX29Q8TEQ0 813 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 NUDT8Q8WV74 236 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 NACC1Q96RE7 527 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 KRTAP4-12Q9BQ66 201 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 TRIM56Q9BRZ2 755 aaKnown RBP5.18□□□□□ -1.58
CD44-229ENST00000528672 PLVAPQ9BX97 442 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 BACH2Q9BYV9 841 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 MUC3BQ9H195 1237 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 TRIM33Q9UPN9 1127 aa5.18□□□□□ -1.58
CD44-229ENST00000528672 NEFLP07196 543 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 ELNP15502 786 aa5.17□□□□□ -1.58
CD44-229ENST00000528672 ZNF157P51786 506 aaPredicted RBP5.17□□□□□ -1.58
CD44-229ENST00000528672 RAC1P63000 192 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms