RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 POLD1P28340 1107 aa22.81■■□□□ 1.24
VPS28-207ENST00000526977 C2CD5Q86YS7 1000 aa22.81■■□□□ 1.24
VPS28-207ENST00000526977 STYK1Q6J9G0 422 aa22.8■■□□□ 1.24
VPS28-207ENST00000526977 IL25Q9H293 177 aa22.8■■□□□ 1.24
VPS28-207ENST00000526977 KCNJ4P48050 445 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 K7ELQ4 463 aaPredicted RBP22.79■■□□□ 1.24
VPS28-207ENST00000526977 SNAP23O00161 211 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 UQCRFS1P1P0C7P4 283 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 CCDC102BQ68D86 513 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 SP8Q8IXZ3 490 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 ANO2Q9NQ90 1003 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 ANKIB1Q9P2G1 1089 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 LEMD3Q9Y2U8 911 aa22.79■■□□□ 1.24
VPS28-207ENST00000526977 XDHP47989 1333 aa22.78■■□□□ 1.24
VPS28-207ENST00000526977 PPEF1O14829 653 aaPredicted RBP22.77■■□□□ 1.24
VPS28-207ENST00000526977 ZNF622Q969S3 477 aaKnown RBP eCLIP22.77■■□□□ 1.242e-11■■■■■ 40.7
VPS28-207ENST00000526977 ATF5Q9Y2D1 282 aaPredicted RBP22.77■■□□□ 1.24
VPS28-207ENST00000526977 ZNF804BA4D1E1 1349 aa22.77■■□□□ 1.24
VPS28-207ENST00000526977 SGSM2O43147 1006 aa22.77■■□□□ 1.24
VPS28-207ENST00000526977 CAVIN4Q5BKX8 364 aa22.77■■□□□ 1.24
VPS28-207ENST00000526977 TICAM2Q86XR7 235 aa22.77■■□□□ 1.24
VPS28-207ENST00000526977 ATP6V0A2Q9Y487 856 aa22.77■■□□□ 1.24
VPS28-207ENST00000526977 C10orf71Q711Q0 1435 aa22.77■■□□□ 1.23
VPS28-207ENST00000526977 EPB41L2O43491 1005 aaKnown RBP22.76■■□□□ 1.23
VPS28-207ENST00000526977 FRAT2O75474 233 aaPredicted RBP22.76■■□□□ 1.23
VPS28-207ENST00000526977 ARID4AP29374 1257 aaPredicted RBP22.76■■□□□ 1.23
VPS28-207ENST00000526977 ILDR2Q71H61 639 aa22.76■■□□□ 1.23
VPS28-207ENST00000526977 CNKSR1Q969H4 720 aa22.76■■□□□ 1.23
VPS28-207ENST00000526977 DNAJC2Q99543 621 aaKnown RBP22.76■■□□□ 1.23
VPS28-207ENST00000526977 TMX4Q9H1E5 349 aaPredicted RBP22.76■■□□□ 1.23
VPS28-207ENST00000526977 DDIT3P35638 169 aa22.75■■□□□ 1.23
VPS28-207ENST00000526977 PODXL2Q9NZ53 605 aa22.75■■□□□ 1.23
VPS28-207ENST00000526977 CHMP5Q9NZZ3 219 aa22.75■■□□□ 1.23
VPS28-207ENST00000526977 PHKA1P46020 1223 aa22.75■■□□□ 1.23
VPS28-207ENST00000526977 PAG1Q9NWQ8 432 aa22.75■■□□□ 1.23
VPS28-207ENST00000526977 NSFL1CQ9UNZ2 370 aaKnown RBP22.75■■□□□ 1.23
VPS28-207ENST00000526977 HIP1O00291 1037 aa22.74■■□□□ 1.23
VPS28-207ENST00000526977 ATP2B4P23634 1241 aa22.74■■□□□ 1.23
VPS28-207ENST00000526977 GNL3LQ9NVN8 582 aaKnown RBP22.74■■□□□ 1.23
VPS28-207ENST00000526977 AK9Q5TCS8 1911 aa22.74■■□□□ 1.23
VPS28-207ENST00000526977 ARAP2Q8WZ64 1704 aa22.74■■□□□ 1.23
VPS28-207ENST00000526977 PSDA5PKW4 1024 aaPredicted RBP22.74■■□□□ 1.23
VPS28-207ENST00000526977 MCCP23508 829 aa22.74■■□□□ 1.23
VPS28-207ENST00000526977 BCAMP50895 628 aa22.74■■□□□ 1.23
VPS28-207ENST00000526977 CWC27Q6UX04 472 aaKnown RBP22.74■■□□□ 1.23
VPS28-207ENST00000526977 A0A1B0GUL6 1792 aa22.73■■□□□ 1.23
VPS28-207ENST00000526977 GPSM2P81274 684 aa22.73■■□□□ 1.23
VPS28-207ENST00000526977 FKBP4Q02790 459 aaKnown RBP eCLIP22.73■■□□□ 1.23
VPS28-207ENST00000526977 FSD1Q9BTV5 496 aa22.73■■□□□ 1.23
VPS28-207ENST00000526977 PALD1Q9ULE6 856 aa22.73■■□□□ 1.23
VPS28-207ENST00000526977 CHRNA5P30532 468 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 MCAMP43121 646 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 ANAPC15P60006 121 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 VPS37DQ86XT2 251 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 WTIPA6NIX2 430 aaPredicted RBP22.72■■□□□ 1.23
VPS28-207ENST00000526977 GOLIM4O00461 696 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 KBTBD3Q8NAB2 608 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 IL17RAQ96F46 866 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 FAM84BQ96KN1 310 aaPredicted RBP22.72■■□□□ 1.23
VPS28-207ENST00000526977 DIAPH3Q9NSV4 1193 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 GGA1Q9UJY5 639 aa22.72■■□□□ 1.23
VPS28-207ENST00000526977 SCARF1Q14162 830 aa22.71■■□□□ 1.23
VPS28-207ENST00000526977 C15orf52Q6ZUT6 534 aaKnown RBP22.71■■□□□ 1.23
VPS28-207ENST00000526977 FBXO33Q7Z6M2 555 aa22.71■■□□□ 1.23
VPS28-207ENST00000526977 EDC3Q96F86 508 aaKnown RBP22.71■■□□□ 1.23
VPS28-207ENST00000526977 NDUFB9Q9Y6M9 179 aa22.71■■□□□ 1.23
VPS28-207ENST00000526977 COL11A2P13942 1736 aaPredicted RBP22.71■■□□□ 1.23
VPS28-207ENST00000526977 ST18O60284 1047 aa22.7■■□□□ 1.23
VPS28-207ENST00000526977 GYG1P46976 350 aa22.7■■□□□ 1.23
VPS28-207ENST00000526977 TGFB2P61812 414 aa22.7■■□□□ 1.23
VPS28-207ENST00000526977 TTF1Q15361 905 aaPredicted RBP22.7■■□□□ 1.23
VPS28-207ENST00000526977 RUFY2Q8WXA3 655 aa22.7■■□□□ 1.23
VPS28-207ENST00000526977 LSG1Q9H089 658 aaKnown RBP22.7■■□□□ 1.23
VPS28-207ENST00000526977 RFX7Q2KHR2 1363 aa22.7■■□□□ 1.22
VPS28-207ENST00000526977 ZBTB22O15209 634 aa22.7■■□□□ 1.22
VPS28-207ENST00000526977 HIBADHP31937 336 aaKnown RBP22.7■■□□□ 1.22
VPS28-207ENST00000526977 HSPA4P34932 840 aa22.7■■□□□ 1.22
VPS28-207ENST00000526977 ZAP70P43403 619 aa22.7■■□□□ 1.22
VPS28-207ENST00000526977 LRRFIP1Q32MZ4 808 aaKnown RBP22.7■■□□□ 1.22
VPS28-207ENST00000526977 PRPF40BQ6NWY9 871 aaKnown RBP22.7■■□□□ 1.22
VPS28-207ENST00000526977 SPATA5Q8NB90 893 aa22.7■■□□□ 1.22
VPS28-207ENST00000526977 SGIP1Q9BQI5 828 aa22.7■■□□□ 1.22
VPS28-207ENST00000526977 SNRKQ9NRH2 765 aa22.7■■□□□ 1.22
VPS28-207ENST00000526977 HMG20BQ9P0W2 317 aa22.69■■□□□ 1.22
VPS28-207ENST00000526977 SEMA3EO15041 775 aa22.69■■□□□ 1.22
VPS28-207ENST00000526977 UFL1O94874 794 aa22.69■■□□□ 1.22
VPS28-207ENST00000526977 MPNDQ8N594 471 aa22.69■■□□□ 1.22
VPS28-207ENST00000526977 TBC1D16Q8TBP0 767 aa22.69■■□□□ 1.22
VPS28-207ENST00000526977 IRS2Q9Y4H2 1338 aa22.68■■□□□ 1.22
VPS28-207ENST00000526977 HSP90AA1P07900 732 aaKnown RBP22.68■■□□□ 1.22
VPS28-207ENST00000526977 RASGRF1Q13972 1273 aa22.68■■□□□ 1.22
VPS28-207ENST00000526977 KIAA1211Q6ZU35 1233 aa22.68■■□□□ 1.22
VPS28-207ENST00000526977 RAD50Q92878 1312 aa22.68■■□□□ 1.22
VPS28-207ENST00000526977 LRRC37AA6NMS7 1700 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 NEK4P51957 841 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 CC2D2BQ6DHV5 1058 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 FOXD4L1Q9NU39 408 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 KLRK1P26718 216 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 PI16Q6UXB8 463 aa22.67■■□□□ 1.22
VPS28-207ENST00000526977 SLC51AQ86UW1 340 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms