RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 PGAP2Q9UHJ9 254 aa13.6□□□□□ -0.23
VPS11-202ENST00000526829 ABT1Q9ULW3 272 aaKnown RBP13.6□□□□□ -0.23
VPS11-202ENST00000526829 TTC36A6NLP5 189 aa13.59□□□□□ -0.23
VPS11-202ENST00000526829 GMPSP49915 693 aaPredicted RBP13.59□□□□□ -0.23
VPS11-202ENST00000526829 SF3B3Q15393 1217 aaKnown RBP13.59□□□□□ -0.23
VPS11-202ENST00000526829 CST9Q5W186 159 aa13.59□□□□□ -0.23
VPS11-202ENST00000526829 CIAPIN1Q6FI81 312 aa13.59□□□□□ -0.23
VPS11-202ENST00000526829 HYPKQ9NX55 129 aa13.59□□□□□ -0.23
VPS11-202ENST00000526829 SH3BP1Q9Y3L3 701 aa13.59□□□□□ -0.23
VPS11-202ENST00000526829 TRAF5O00463 557 aa13.58□□□□□ -0.24
VPS11-202ENST00000526829 ZNF853P0CG23 659 aa13.58□□□□□ -0.24
VPS11-202ENST00000526829 TRIM28Q13263 835 aaKnown RBP13.58□□□□□ -0.24
VPS11-202ENST00000526829 DNTTIP2Q5QJE6 756 aaKnown RBP13.58□□□□□ -0.24
VPS11-202ENST00000526829 COL4A1P02462 1669 aa13.58□□□□□ -0.24
VPS11-202ENST00000526829 TNIP1Q15025 636 aa13.58□□□□□ -0.24
VPS11-202ENST00000526829 DUSP27Q5VZP5 1158 aa13.58□□□□□ -0.24
VPS11-202ENST00000526829 YDJCA8MPS7 323 aa13.57□□□□□ -0.24
VPS11-202ENST00000526829 HSPA8P11142 646 aaKnown RBP13.57□□□□□ -0.24
VPS11-202ENST00000526829 MAP2K1Q02750 393 aaPredicted RBP13.57□□□□□ -0.24
VPS11-202ENST00000526829 MBIPQ9NS73 344 aa13.57□□□□□ -0.24
VPS11-202ENST00000526829 TLL2Q9Y6L7 1015 aa13.57□□□□□ -0.24
VPS11-202ENST00000526829 FSD2A1L4K1 749 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 ATP5J2-PTCD1G3V325 749 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 RAD17O75943 681 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 LBX1P52954 281 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 GNAI1P63096 354 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 ZC3H15Q8WU90 426 aaKnown RBP13.56□□□□□ -0.24
VPS11-202ENST00000526829 CELF1Q92879 486 aaKnown RBP13.56□□□□□ -0.24
VPS11-202ENST00000526829 FAM89AQ96GI7 184 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 CAPNS2Q96L46 248 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 ECE1P42892 770 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 HIRAP54198 1017 aaPredicted RBP13.56□□□□□ -0.24
VPS11-202ENST00000526829 GOLGA2Q08379 1002 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 BCL2L13Q9BXK5 485 aa13.56□□□□□ -0.24
VPS11-202ENST00000526829 GEMIN8Q9NWZ8 242 aaKnown RBP13.56□□□□□ -0.24
VPS11-202ENST00000526829 RIC3Q7Z5B4 369 aa13.55□□□□□ -0.24
VPS11-202ENST00000526829 ZNF428Q96B54 188 aa13.55□□□□□ -0.24
VPS11-202ENST00000526829 ANTXR1Q9H6X2 564 aa13.55□□□□□ -0.24
VPS11-202ENST00000526829 GOLGA6L3A6NEY3 463 aa13.54□□□□□ -0.24
VPS11-202ENST00000526829 CYP4F22Q6NT55 531 aa13.54□□□□□ -0.24
VPS11-202ENST00000526829 IFT57Q9NWB7 429 aa13.54□□□□□ -0.24
VPS11-202ENST00000526829 CNOT7Q9UIV1 285 aaKnown RBP13.54□□□□□ -0.24
VPS11-202ENST00000526829 IRS4O14654 1257 aaPredicted RBP13.54□□□□□ -0.24
VPS11-202ENST00000526829 APAF1O14727 1248 aa13.54□□□□□ -0.24
VPS11-202ENST00000526829 XRCC6P12956 609 aaKnown RBP eCLIP13.54□□□□□ -0.24
VPS11-202ENST00000526829 TRPM4Q8TD43 1214 aa13.54□□□□□ -0.24
VPS11-202ENST00000526829 DPF2Q92785 391 aa13.54□□□□□ -0.24
VPS11-202ENST00000526829 HHIPL1Q96JK4 782 aa13.54□□□□□ -0.24
VPS11-202ENST00000526829 GLIS2Q9BZE0 524 aaPredicted RBP13.54□□□□□ -0.24
VPS11-202ENST00000526829 GPSM2P81274 684 aa13.53□□□□□ -0.24
VPS11-202ENST00000526829 WASHC4Q2M389 1173 aa13.53□□□□□ -0.24
VPS11-202ENST00000526829 SAPCD2Q86UD0 394 aa13.53□□□□□ -0.24
VPS11-202ENST00000526829 GPR101Q96P66 508 aaPredicted RBP13.53□□□□□ -0.24
VPS11-202ENST00000526829 POLLQ9UGP5 575 aa13.53□□□□□ -0.24
VPS11-202ENST00000526829 NSFL1CQ9UNZ2 370 aaKnown RBP13.53□□□□□ -0.24
VPS11-202ENST00000526829 ZNF521Q96K83 1311 aa13.53□□□□□ -0.24
VPS11-202ENST00000526829 SHTN1A0MZ66 631 aa13.52□□□□□ -0.24
VPS11-202ENST00000526829 CELF2O95319 508 aaKnown RBP13.52□□□□□ -0.24
VPS11-202ENST00000526829 MAP2K2P36507 400 aa13.52□□□□□ -0.24
VPS11-202ENST00000526829 ZBTB38Q8NAP3 1195 aaPredicted RBP13.52□□□□□ -0.24
VPS11-202ENST00000526829 C6orf229H3BNL8 230 aa13.52□□□□□ -0.25
VPS11-202ENST00000526829 H7C1D1 291 aa13.52□□□□□ -0.25
VPS11-202ENST00000526829 PSMD14O00487 310 aa13.52□□□□□ -0.25
VPS11-202ENST00000526829 DDX58O95786 925 aaKnown RBP13.52□□□□□ -0.25
VPS11-202ENST00000526829 RPS8P62241 208 aaKnown RBP13.52□□□□□ -0.25
VPS11-202ENST00000526829 CDC37L1Q7L3B6 337 aa13.52□□□□□ -0.25
VPS11-202ENST00000526829 MICALL2Q8IY33 904 aa13.52□□□□□ -0.25
VPS11-202ENST00000526829 EYA3Q99504 573 aa13.52□□□□□ -0.25
VPS11-202ENST00000526829 PHAXQ9H814 394 aaKnown RBP13.52□□□□□ -0.25
VPS11-202ENST00000526829 G3V3G9 751 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 ELL2O00472 640 aaPredicted RBP13.51□□□□□ -0.25
VPS11-202ENST00000526829 DCAF8Q5TAQ9 597 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 TBC1D16Q8TBP0 767 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 DBNDD1Q9H9R9 158 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 ZBTB12Q9Y330 459 aaPredicted RBP13.51□□□□□ -0.25
VPS11-202ENST00000526829 RTL9Q8NET4 1388 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 SCN9AQ15858 1988 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 LETM1O95202 739 aaPredicted RBP13.51□□□□□ -0.25
VPS11-202ENST00000526829 RPS12P25398 132 aaKnown RBP13.51□□□□□ -0.25
VPS11-202ENST00000526829 CCDC30Q5VVM6 783 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 CCDC191Q8NCU4 936 aa13.51□□□□□ -0.25
VPS11-202ENST00000526829 RIMBP2O15034 1052 aa13.5□□□□□ -0.25
VPS11-202ENST00000526829 ECE2O60344 883 aa13.5□□□□□ -0.25
VPS11-202ENST00000526829 AOC2O75106 756 aa13.5□□□□□ -0.25
VPS11-202ENST00000526829 PCCAP05165 728 aaPredicted RBP13.5□□□□□ -0.25
VPS11-202ENST00000526829 MTERF4Q7Z6M4 381 aaKnown RBP13.5□□□□□ -0.25
VPS11-202ENST00000526829 FAM177A1Q8N128 213 aaPredicted RBP13.5□□□□□ -0.25
VPS11-202ENST00000526829 C8orf58Q8NAV2 365 aa13.5□□□□□ -0.25
VPS11-202ENST00000526829 MYD88Q99836 296 aa13.5□□□□□ -0.25
VPS11-202ENST00000526829 BEGAINQ9BUH8 593 aa13.5□□□□□ -0.25
VPS11-202ENST00000526829 GTPBP4Q9BZE4 634 aaKnown RBP13.5□□□□□ -0.25
VPS11-202ENST00000526829 GRM1Q13255 1194 aa13.49□□□□□ -0.25
VPS11-202ENST00000526829 SEC31BQ9NQW1 1179 aa13.49□□□□□ -0.25
VPS11-202ENST00000526829 ISY1Q9ULR0 285 aaKnown RBP13.49□□□□□ -0.25
VPS11-202ENST00000526829 PSME4Q14997 1843 aa13.49□□□□□ -0.25
VPS11-202ENST00000526829 ZNF609O15014 1411 aa13.49□□□□□ -0.25
VPS11-202ENST00000526829 POLR2AP24928 1970 aaKnown RBP13.49□□□□□ -0.25
VPS11-202ENST00000526829 DOK7Q18PE1 504 aa13.49□□□□□ -0.25
VPS11-202ENST00000526829 SAMD7Q7Z3H4 446 aa13.49□□□□□ -0.25
VPS11-202ENST00000526829 USP48Q86UV5 1035 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms