RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 CCDC30Q5VVM6 783 aa8.47□□□□□ -1.05
CD44-221ENST00000526000 CTU1Q7Z7A3 348 aaKnown RBP8.47□□□□□ -1.05
CD44-221ENST00000526000 HELBQ8NG08 1087 aaPredicted RBP8.47□□□□□ -1.05
CD44-221ENST00000526000 TTLL11Q8NHH1 800 aa8.47□□□□□ -1.05
CD44-221ENST00000526000 ZNF296Q8WUU4 475 aaPredicted RBP8.47□□□□□ -1.05
CD44-221ENST00000526000 R3HDMLQ9H3Y0 253 aa8.47□□□□□ -1.05
CD44-221ENST00000526000 F8W031 263 aaPredicted RBP8.46□□□□□ -1.06
CD44-221ENST00000526000 WNT10BO00744 389 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 CCT4P50991 539 aaKnown RBP8.46□□□□□ -1.06
CD44-221ENST00000526000 CTSWP56202 376 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 GTF2IP78347 998 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 CCDC184Q52MB2 194 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 TTLL5Q6EMB2 1281 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 KSR2Q6VAB6 950 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 UBE3BQ7Z3V4 1068 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 PODNQ7Z5L7 613 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 KIAA0825Q8IV33 1275 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 OGFOD1Q8N543 542 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 CDC5LQ99459 802 aaKnown RBP8.46□□□□□ -1.06
CD44-221ENST00000526000 IFT57Q9NWB7 429 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 SAGE1Q9NXZ1 904 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 HPS5Q9UPZ3 1129 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 JAG2Q9Y219 1238 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 PCDHAC2Q9Y5I4 1007 aa8.46□□□□□ -1.06
CD44-221ENST00000526000 PLIN1O60240 522 aa8.45□□□□□ -1.06
CD44-221ENST00000526000 TAF5LO75529 589 aa8.45□□□□□ -1.06
CD44-221ENST00000526000 SLC4A2P04920 1241 aa8.45□□□□□ -1.06
CD44-221ENST00000526000 DACT2Q5SW24 774 aa8.45□□□□□ -1.06
CD44-221ENST00000526000 BSDC1Q9NW68 430 aaPredicted RBP8.45□□□□□ -1.06
CD44-221ENST00000526000 ANGEL1Q9UNK9 670 aaKnown RBP8.45□□□□□ -1.06
CD44-221ENST00000526000 LAMB2P55268 1798 aa8.45□□□□□ -1.06
CD44-221ENST00000526000 H7C1W4 665 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 GPR25O00155 361 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 ITGA6P23229 1130 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 NF2P35240 595 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 IGHMBP2P38935 993 aaKnown RBP8.44□□□□□ -1.06
CD44-221ENST00000526000 KCNJ4P48050 445 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 NEXNQ0ZGT2 675 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 ARMC9Q7Z3E5 817 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 SLC10A4Q96EP9 437 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 STK31Q9BXU1 1019 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 PRKRIP1Q9H875 184 aaPredicted RBP8.44□□□□□ -1.06
CD44-221ENST00000526000 CHMP3Q9Y3E7 222 aa8.44□□□□□ -1.06
CD44-221ENST00000526000 CLRN2A0PK11 232 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 NEURL1BA8MQ27 555 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 FKBP1BP68106 108 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 CALD1Q05682 793 aaKnown RBP8.43□□□□□ -1.06
CD44-221ENST00000526000 STRIP1Q5VSL9 837 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 MPHOSPH8Q99549 860 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 COA1Q9GZY4 146 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 LEMD3Q9Y2U8 911 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 ZNF804BA4D1E1 1349 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 ANKRD36CQ5JPF3 1778 aa8.43□□□□□ -1.06
CD44-221ENST00000526000 SCN9AQ15858 1988 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 ZNF316A6NFI3 1004 aaPredicted RBP8.42□□□□□ -1.06
CD44-221ENST00000526000 FKTNO75072 461 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 TM4SF4P48230 202 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 RBM5P52756 815 aaKnown RBP eCLIP8.42□□□□□ -1.06
CD44-221ENST00000526000 CHRNDQ07001 517 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 DLGAP5Q15398 846 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 TWISTNBQ3B726 338 aaPredicted RBP8.42□□□□□ -1.06
CD44-221ENST00000526000 REM2Q8IYK8 340 aaPredicted RBP8.42□□□□□ -1.06
CD44-221ENST00000526000 ZNF594Q96JF6 807 aaPredicted RBP8.42□□□□□ -1.06
CD44-221ENST00000526000 CLMNQ96JQ2 1002 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 VEZTQ9HBM0 779 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 CD209Q9NNX6 404 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 THSD7BQ9C0I4 1608 aa8.42□□□□□ -1.06
CD44-221ENST00000526000 DDX60Q8IY21 1712 aaKnown RBP8.42□□□□□ -1.06
CD44-221ENST00000526000 AOX1Q06278 1338 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 PITPNM2Q9BZ72 1349 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 F6X3S4 739 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 ECM2O94769 699 aaPredicted RBP8.41□□□□□ -1.06
CD44-221ENST00000526000 FKBP5Q13451 457 aaPredicted RBP8.41□□□□□ -1.06
CD44-221ENST00000526000 GCKRQ14397 625 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 SPRYD7Q5W111 196 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 PIAS4Q8N2W9 510 aaPredicted RBP8.41□□□□□ -1.06
CD44-221ENST00000526000 CERS5Q8N5B7 392 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 PRMT6Q96LA8 375 aaPredicted RBP8.41□□□□□ -1.06
CD44-221ENST00000526000 ANKRD2Q9GZV1 360 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 DEFB129Q9H1M3 183 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 TRIM17Q9Y577 477 aa8.41□□□□□ -1.06
CD44-221ENST00000526000 MED23Q9ULK4 1368 aa8.4□□□□□ -1.06
CD44-221ENST00000526000 ANKRD18BA2A2Z9 1011 aa8.4□□□□□ -1.06
CD44-221ENST00000526000 FLIIQ13045 1269 aa8.4□□□□□ -1.06
CD44-221ENST00000526000 PKN2Q16513 984 aaKnown RBP8.4□□□□□ -1.06
CD44-221ENST00000526000 CFAP100Q494V2 611 aa8.4□□□□□ -1.06
CD44-221ENST00000526000 LDLRAD1Q5T700 205 aa8.4□□□□□ -1.06
CD44-221ENST00000526000 NBPF12Q5TAG4 269 aaPredicted RBP8.4□□□□□ -1.06
CD44-221ENST00000526000 DNAAF4Q8WXU2 420 aa8.4□□□□□ -1.06
CD44-221ENST00000526000 POTEFA5A3E0 1075 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 USP2O75604 605 aaPredicted RBP8.39□□□□□ -1.07
CD44-221ENST00000526000 MYCP01106 439 aaPredicted RBP8.39□□□□□ -1.07
CD44-221ENST00000526000 CSF1RP07333 972 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 CASP7P55210 303 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 SREBF2Q12772 1141 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 TAF7LQ5H9L4 462 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 EPHA10Q5JZY3 1008 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 FBXO46Q6PJ61 603 aaPredicted RBP8.39□□□□□ -1.07
CD44-221ENST00000526000 LMBR1LQ6UX01 489 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 IFNL1Q8IU54 200 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms