RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 SASH1O94885 1247 aa14.54□□□□□ -0.08
LIMCH1-221ENST00000515785 ALDH1A1P00352 501 aa14.54□□□□□ -0.08
LIMCH1-221ENST00000515785 IFNL1Q8IU54 200 aa14.54□□□□□ -0.08
LIMCH1-221ENST00000515785 JARID2Q92833 1246 aaPredicted RBP14.54□□□□□ -0.08
LIMCH1-221ENST00000515785 SLC10A4Q96EP9 437 aa14.54□□□□□ -0.08
LIMCH1-221ENST00000515785 PTPN22Q9Y2R2 807 aa14.54□□□□□ -0.08
LIMCH1-221ENST00000515785 PSME4Q14997 1843 aa14.54□□□□□ -0.08
LIMCH1-221ENST00000515785 WNT10BO00744 389 aa14.53□□□□□ -0.08
LIMCH1-221ENST00000515785 RIPK4P57078 832 aa14.53□□□□□ -0.08
LIMCH1-221ENST00000515785 ABCB7O75027 752 aa14.52□□□□□ -0.09
LIMCH1-221ENST00000515785 MYCP01106 439 aaPredicted RBP14.52□□□□□ -0.09
LIMCH1-221ENST00000515785 LDLRAD1Q5T700 205 aa14.52□□□□□ -0.09
LIMCH1-221ENST00000515785 OGFOD1Q8N543 542 aa14.52□□□□□ -0.09
LIMCH1-221ENST00000515785 ERO1AQ96HE7 468 aa14.52□□□□□ -0.09
LIMCH1-221ENST00000515785 TMEM106CQ9BVX2 250 aa14.52□□□□□ -0.09
LIMCH1-221ENST00000515785 LAS1LQ9Y4W2 734 aaKnown RBP14.52□□□□□ -0.09
LIMCH1-221ENST00000515785 MANSC4A6NHS7 340 aaPredicted RBP14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 H0YGN5 161 aa14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 IGF2BP3O00425 579 aaKnown RBP eCLIP14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 DLL1O00548 723 aa14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 INHBEP58166 350 aa14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 PODNQ7Z5L7 613 aa14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 CLMNQ96JQ2 1002 aa14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 EFCC1Q9HA90 598 aa14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 RBBP6Q7Z6E9 1792 aaKnown RBP14.51□□□□□ -0.09
LIMCH1-221ENST00000515785 ZNF609O15014 1411 aa14.5□□□□□ -0.09
LIMCH1-221ENST00000515785 CEP290O15078 2479 aa14.5□□□□□ -0.09
LIMCH1-221ENST00000515785 XDHP47989 1333 aa14.5□□□□□ -0.09
LIMCH1-221ENST00000515785 ATP2B4P23634 1241 aa14.5□□□□□ -0.09
LIMCH1-221ENST00000515785 DACT2Q5SW24 774 aa14.5□□□□□ -0.09
LIMCH1-221ENST00000515785 ARMC5Q96C12 935 aa14.5□□□□□ -0.09
LIMCH1-221ENST00000515785 TRIOBPQ9H2D6 2365 aa14.49□□□□□ -0.09
LIMCH1-221ENST00000515785 CAP1Q01518 475 aa14.49□□□□□ -0.09
LIMCH1-221ENST00000515785 CRHR2Q13324 411 aa14.49□□□□□ -0.09
LIMCH1-221ENST00000515785 CCDC152Q4G0S7 254 aa14.49□□□□□ -0.09
LIMCH1-221ENST00000515785 WNK4Q96J92 1243 aa14.49□□□□□ -0.09
LIMCH1-221ENST00000515785 PNNQ9H307 717 aaKnown RBP14.49□□□□□ -0.09
LIMCH1-221ENST00000515785 SLC4A8Q2Y0W8 1093 aa14.48□□□□□ -0.09
LIMCH1-221ENST00000515785 HDGFL1Q5TGJ6 251 aa14.48□□□□□ -0.09
LIMCH1-221ENST00000515785 ANKRD18AQ8IVF6 992 aa14.48□□□□□ -0.09
LIMCH1-221ENST00000515785 ZBTB38Q8NAP3 1195 aaPredicted RBP14.48□□□□□ -0.09
LIMCH1-221ENST00000515785 SLC17A8Q8NDX2 589 aa14.48□□□□□ -0.09
LIMCH1-221ENST00000515785 BABAM1Q9NWV8 329 aa14.48□□□□□ -0.09
LIMCH1-221ENST00000515785 MKI67P46013 3256 aaKnown RBP14.48□□□□□ -0.09
LIMCH1-221ENST00000515785 SP3Q02447 781 aa14.47□□□□□ -0.09
LIMCH1-221ENST00000515785 TRIM28Q13263 835 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-221ENST00000515785 NEUROD2Q15784 382 aa14.47□□□□□ -0.09
LIMCH1-221ENST00000515785 RIC3Q7Z5B4 369 aa14.47□□□□□ -0.09
LIMCH1-221ENST00000515785 APOBEC3FQ8IUX4 373 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-221ENST00000515785 KIAA0825Q8IV33 1275 aa14.47□□□□□ -0.09
LIMCH1-221ENST00000515785 OTUD5Q96G74 571 aa14.47□□□□□ -0.09
LIMCH1-221ENST00000515785 OTUD7BQ6GQQ9 843 aa14.46□□□□□ -0.09
LIMCH1-221ENST00000515785 MYD88Q99836 296 aa14.46□□□□□ -0.09
LIMCH1-221ENST00000515785 DEFB129Q9H1M3 183 aa14.46□□□□□ -0.09
LIMCH1-221ENST00000515785 DBF4Q9UBU7 674 aaPredicted RBP14.46□□□□□ -0.09
LIMCH1-221ENST00000515785 HTTP42858 3142 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 PDE8AO60658 829 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 ZBTB48P10074 688 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 STRIP1Q5VSL9 837 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 TTLL5Q6EMB2 1281 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 TXNRD3Q86VQ6 643 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 ZNF333Q96JL9 665 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 PTPN18Q99952 460 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 HYPKQ9NX55 129 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 PTCH2Q9Y6C5 1203 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 SPEF2Q9C093 1822 aa14.45□□□□□ -0.1
LIMCH1-221ENST00000515785 CHL1O00533 1208 aa14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 PPP1R12BO60237 982 aaPredicted RBP14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 HSP90B1P14625 803 aaKnown RBP14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 GJA5P36382 358 aa14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 TMPOP42166 694 aaKnown RBP14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 SLC9C1Q4G0N8 1177 aa14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 NBPF11Q86T75 865 aa14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 MINPP1Q9UNW1 487 aa14.44□□□□□ -0.1
LIMCH1-221ENST00000515785 MYO3BQ8WXR4 1341 aa14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 ZNF646O15015 1829 aaPredicted RBP14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 CCT4P50991 539 aaKnown RBP14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 GTF2IP78347 998 aa14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 DLGAP5Q15398 846 aa14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 DPF3Q92784 378 aa14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 PHAXQ9H814 394 aaKnown RBP14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 RBM27Q9P2N5 1060 aaKnown RBP14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 PCDHAC2Q9Y5I4 1007 aa14.43□□□□□ -0.1
LIMCH1-221ENST00000515785 CENPFP49454 3210 aa14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 CLRN2A0PK11 232 aa14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 PCCAP05165 728 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 GOLGA2Q08379 1002 aa14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 LMOD3Q0VAK6 560 aa14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 NBPF12Q5TAG4 269 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 SH3TC2Q8TF17 1288 aa14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 ZBED3Q96IU2 234 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 COA1Q9GZY4 146 aa14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 MED23Q9ULK4 1368 aa14.42□□□□□ -0.1
LIMCH1-221ENST00000515785 USP2O75604 605 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 ECM2O94769 699 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 KLRK1P26718 216 aa14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 MAP3K11Q16584 847 aa14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 DUSP27Q5VZP5 1158 aa14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 CCDC191Q8NCU4 936 aa14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 CDC5LQ99459 802 aaKnown RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms