RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 H0YIN7 160 aa19.3■□□□□ 0.68
NUP54-214ENST00000514307 MSL1Q68DK7 614 aa19.3■□□□□ 0.68
NUP54-214ENST00000514307 SP8Q8IXZ3 490 aa19.3■□□□□ 0.68
NUP54-214ENST00000514307 MASTLQ96GX5 879 aa19.3■□□□□ 0.68
NUP54-214ENST00000514307 HELLSQ9NRZ9 838 aa19.3■□□□□ 0.68
NUP54-214ENST00000514307 C4AP0C0L4 1744 aa19.3■□□□□ 0.68
NUP54-214ENST00000514307 COL24A1Q17RW2 1714 aa19.29■□□□□ 0.68
NUP54-214ENST00000514307 SEMA3EO15041 775 aa19.29■□□□□ 0.68
NUP54-214ENST00000514307 RNF113AO15541 343 aaKnown RBP19.29■□□□□ 0.68
NUP54-214ENST00000514307 ATP2B4P23634 1241 aa19.29■□□□□ 0.68
NUP54-214ENST00000514307 SNRKQ9NRH2 765 aa19.29■□□□□ 0.68
NUP54-214ENST00000514307 MYH3P11055 1940 aa19.29■□□□□ 0.68
NUP54-214ENST00000514307 DDX60Q8IY21 1712 aaKnown RBP19.28■□□□□ 0.68
NUP54-214ENST00000514307 ZNF804BA4D1E1 1349 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 XDHP47989 1333 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 SRGNP10124 158 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 ZAP70P43403 619 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 PHKA1P46020 1223 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 BCAMP50895 628 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 NMIQ13287 307 aaPredicted RBP19.28■□□□□ 0.68
NUP54-214ENST00000514307 MCMDC2Q4G0Z9 681 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 SPATA5Q8NB90 893 aa19.28■□□□□ 0.68
NUP54-214ENST00000514307 ZBTB22O15209 634 aa19.27■□□□□ 0.68
NUP54-214ENST00000514307 HIBADHP31937 336 aaKnown RBP19.27■□□□□ 0.68
NUP54-214ENST00000514307 R3HDM1Q15032 1099 aaKnown RBP19.27■□□□□ 0.68
NUP54-214ENST00000514307 STYK1Q6J9G0 422 aa19.27■□□□□ 0.68
NUP54-214ENST00000514307 FBXO33Q7Z6M2 555 aa19.27■□□□□ 0.68
NUP54-214ENST00000514307 EDC3Q96F86 508 aaKnown RBP19.27■□□□□ 0.68
NUP54-214ENST00000514307 DENND2AQ9ULE3 1009 aa19.27■□□□□ 0.68
NUP54-214ENST00000514307 LAMB2P55268 1798 aa19.27■□□□□ 0.67
NUP54-214ENST00000514307 MCAMP43121 646 aa19.26■□□□□ 0.67
NUP54-214ENST00000514307 ANAPC15P60006 121 aa19.26■□□□□ 0.67
NUP54-214ENST00000514307 C2CD5Q86YS7 1000 aa19.26■□□□□ 0.67
NUP54-214ENST00000514307 FAM84BQ96KN1 310 aaPredicted RBP19.26■□□□□ 0.67
NUP54-214ENST00000514307 HMG20BQ9P0W2 317 aa19.26■□□□□ 0.67
NUP54-214ENST00000514307 SRCAPQ6ZRS2 3230 aa19.26■□□□□ 0.67
NUP54-214ENST00000514307 IGSF3O75054 1194 aa19.25■□□□□ 0.67
NUP54-214ENST00000514307 FRAT2O75474 233 aaPredicted RBP19.25■□□□□ 0.67
NUP54-214ENST00000514307 MAP3K12Q12852 859 aa19.25■□□□□ 0.67
NUP54-214ENST00000514307 WASHC4Q2M389 1173 aa19.25■□□□□ 0.67
NUP54-214ENST00000514307 C15orf52Q6ZUT6 534 aaKnown RBP19.25■□□□□ 0.67
NUP54-214ENST00000514307 CNKSR1Q969H4 720 aa19.25■□□□□ 0.67
NUP54-214ENST00000514307 PODXL2Q9NZ53 605 aa19.25■□□□□ 0.67
NUP54-214ENST00000514307 GGA1Q9UJY5 639 aa19.25■□□□□ 0.67
NUP54-214ENST00000514307 NSFL1CQ9UNZ2 370 aaKnown RBP19.25■□□□□ 0.67
NUP54-214ENST00000514307 ATP6V0A2Q9Y487 856 aa19.25■□□□□ 0.67
NUP54-214ENST00000514307 SNAP23O00161 211 aa19.24■□□□□ 0.67
NUP54-214ENST00000514307 PPEF1O14829 653 aaPredicted RBP19.24■□□□□ 0.67
NUP54-214ENST00000514307 SCARF1Q14162 830 aa19.24■□□□□ 0.67
NUP54-214ENST00000514307 ZMYM1Q5SVZ6 1142 aa19.24■□□□□ 0.67
NUP54-214ENST00000514307 ZNF622Q969S3 477 aaKnown RBP eCLIP19.24■□□□□ 0.67
NUP54-214ENST00000514307 FAM227BQ96M60 508 aa19.24■□□□□ 0.67
NUP54-214ENST00000514307 NDUFB9Q9Y6M9 179 aa19.24■□□□□ 0.67
NUP54-214ENST00000514307 CYP2E1P05181 493 aaPredicted RBP19.23■□□□□ 0.67
NUP54-214ENST00000514307 GYG1P46976 350 aa19.23■□□□□ 0.67
NUP54-214ENST00000514307 RABEP1Q15276 862 aa19.23■□□□□ 0.67
NUP54-214ENST00000514307 TMED8Q6PL24 325 aaPredicted RBP19.23■□□□□ 0.67
NUP54-214ENST00000514307 LSG1Q9H089 658 aaKnown RBP19.23■□□□□ 0.67
NUP54-214ENST00000514307 ANTXR1Q9H6X2 564 aa19.23■□□□□ 0.67
NUP54-214ENST00000514307 LRP5O75197 1615 aa19.22■□□□□ 0.67
NUP54-214ENST00000514307 GPSM2P81274 684 aa19.22■□□□□ 0.67
NUP54-214ENST00000514307 UBE3CQ15386 1083 aa19.22■□□□□ 0.67
NUP54-214ENST00000514307 RNF20Q5VTR2 975 aa19.22■□□□□ 0.67
NUP54-214ENST00000514307 ZNF804AQ7Z570 1209 aa19.22■□□□□ 0.67
NUP54-214ENST00000514307 MAP4K1Q92918 833 aa19.22■□□□□ 0.67
NUP54-214ENST00000514307 ZKSCAN1P17029 563 aaPredicted RBP19.21■□□□□ 0.67
NUP54-214ENST00000514307 POLD1P28340 1107 aa19.21■□□□□ 0.67
NUP54-214ENST00000514307 HSPA4P34932 840 aa19.21■□□□□ 0.67
NUP54-214ENST00000514307 RASGRF1Q13972 1273 aa19.21■□□□□ 0.67
NUP54-214ENST00000514307 GRIPAP1Q4V328 841 aa19.21■□□□□ 0.67
NUP54-214ENST00000514307 SLC9C2Q5TAH2 1124 aa19.21■□□□□ 0.67
NUP54-214ENST00000514307 CC2D2BQ6DHV5 1058 aa19.21■□□□□ 0.67
NUP54-214ENST00000514307 LRP2BPQ9P2M1 347 aa19.21■□□□□ 0.67
NUP54-214ENST00000514307 PDS5AQ29RF7 1337 aaKnown RBP19.21■□□□□ 0.67
NUP54-214ENST00000514307 A0A0D9SFI3 127 aa19.2■□□□□ 0.66
NUP54-214ENST00000514307 IDH1O75874 414 aaKnown RBP19.2■□□□□ 0.66
NUP54-214ENST00000514307 SPTY2D1Q68D10 685 aaPredicted RBP19.2■□□□□ 0.66
NUP54-214ENST00000514307 MPNDQ8N594 471 aa19.2■□□□□ 0.66
NUP54-214ENST00000514307 APPBP2Q92624 585 aa19.2■□□□□ 0.66
NUP54-214ENST00000514307 U3KPZ7 1027 aaPredicted RBP19.2■□□□□ 0.66
NUP54-214ENST00000514307 TUBGCP6Q96RT7 1819 aa19.19■□□□□ 0.66
NUP54-214ENST00000514307 C6orf229H3BNL8 230 aa19.19■□□□□ 0.66
NUP54-214ENST00000514307 UFL1O94874 794 aa19.19■□□□□ 0.66
NUP54-214ENST00000514307 ZGPATQ8N5A5 531 aaKnown RBP19.19■□□□□ 0.66
NUP54-214ENST00000514307 SNX21Q969T3 373 aa19.19■□□□□ 0.66
NUP54-214ENST00000514307 PIH1D3Q9NQM4 214 aaKnown RBP19.19■□□□□ 0.66
NUP54-214ENST00000514307 CCDC171Q6TFL3 1326 aa19.19■□□□□ 0.66
NUP54-214ENST00000514307 ADD2P35612 726 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 PI16Q6UXB8 463 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 TBC1D16Q8TBP0 767 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 WDR66Q8TBY9 1149 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 IL17RAQ96F46 866 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 EYA3Q99504 573 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 KIF2CQ99661 725 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 ZC3H12CQ9C0D7 883 aaKnown RBP19.18■□□□□ 0.66
NUP54-214ENST00000514307 MTFR1LQ9H019 292 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 CTNNA3Q9UI47 895 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 CASZ1Q86V15 1759 aa19.18■□□□□ 0.66
NUP54-214ENST00000514307 WTIPA6NIX2 430 aaPredicted RBP19.17■□□□□ 0.66
NUP54-214ENST00000514307 ST18O60284 1047 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms