RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SASH1O94885 1247 aa26.3■■□□□ 1.8
SQSTM1-215ENST00000514093 NF2P35240 595 aa26.3■■□□□ 1.8
SQSTM1-215ENST00000514093 OGFOD1Q8N543 542 aa26.3■■□□□ 1.8
SQSTM1-215ENST00000514093 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.3■■□□□ 1.8
SQSTM1-215ENST00000514093 FKTNO75072 461 aa26.29■■□□□ 1.8
SQSTM1-215ENST00000514093 MINPP1Q9UNW1 487 aa26.29■■□□□ 1.8
SQSTM1-215ENST00000514093 SREBF2Q12772 1141 aa26.28■■□□□ 1.8
SQSTM1-215ENST00000514093 WDR43Q15061 677 aaKnown RBP eCLIP26.28■■□□□ 1.8
SQSTM1-215ENST00000514093 NOM1Q5C9Z4 860 aaKnown RBP26.28■■□□□ 1.8
SQSTM1-215ENST00000514093 METTL22Q9BUU2 404 aaPredicted RBP26.28■■□□□ 1.8
SQSTM1-215ENST00000514093 FZD1Q9UP38 647 aa26.28■■□□□ 1.8
SQSTM1-215ENST00000514093 ADAMTS8Q9UP79 889 aa26.28■■□□□ 1.8
SQSTM1-215ENST00000514093 TXNRD3Q86VQ6 643 aa26.27■■□□□ 1.8
SQSTM1-215ENST00000514093 MED23Q9ULK4 1368 aa26.27■■□□□ 1.8
SQSTM1-215ENST00000514093 CTSWP56202 376 aa26.26■■□□□ 1.79
SQSTM1-215ENST00000514093 CDC5LQ99459 802 aaKnown RBP26.26■■□□□ 1.79
SQSTM1-215ENST00000514093 ZNF853P0CG23 659 aa26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 CCT4P50991 539 aaKnown RBP26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 STRIP1Q5VSL9 837 aa26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 ARMC9Q7Z3E5 817 aa26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 TTLL11Q8NHH1 800 aa26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 GREM2Q9H772 168 aa26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 BSDC1Q9NW68 430 aaPredicted RBP26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 ANGEL1Q9UNK9 670 aaKnown RBP26.25■■□□□ 1.79
SQSTM1-215ENST00000514093 SPRYD7Q5W111 196 aa26.24■■□□□ 1.79
SQSTM1-215ENST00000514093 MAP3K2Q9Y2U5 619 aa26.24■■□□□ 1.79
SQSTM1-215ENST00000514093 KIAA0825Q8IV33 1275 aa26.23■■□□□ 1.79
SQSTM1-215ENST00000514093 C8orf58Q8NAV2 365 aa26.23■■□□□ 1.79
SQSTM1-215ENST00000514093 CFHR5Q9BXR6 569 aa26.23■■□□□ 1.79
SQSTM1-215ENST00000514093 COA1Q9GZY4 146 aa26.23■■□□□ 1.79
SQSTM1-215ENST00000514093 MYO3BQ8WXR4 1341 aa26.22■■□□□ 1.79
SQSTM1-215ENST00000514093 MYBBP1AQ9BQG0 1328 aaKnown RBP26.22■■□□□ 1.79
SQSTM1-215ENST00000514093 LDLRAD1Q5T700 205 aa26.22■■□□□ 1.79
SQSTM1-215ENST00000514093 TTLL5Q6EMB2 1281 aa26.22■■□□□ 1.79
SQSTM1-215ENST00000514093 ZNF646O15015 1829 aaPredicted RBP26.21■■□□□ 1.79
SQSTM1-215ENST00000514093 SPEF2Q9C093 1822 aa26.21■■□□□ 1.79
SQSTM1-215ENST00000514093 DDX58O95786 925 aaKnown RBP26.21■■□□□ 1.79
SQSTM1-215ENST00000514093 IGKV5-2P06315 115 aa26.21■■□□□ 1.79
SQSTM1-215ENST00000514093 KLRK1P26718 216 aa26.21■■□□□ 1.79
SQSTM1-215ENST00000514093 TRIM17Q9Y577 477 aa26.21■■□□□ 1.79
SQSTM1-215ENST00000514093 APOBEC3FQ8IUX4 373 aaKnown RBP26.2■■□□□ 1.78
SQSTM1-215ENST00000514093 POTEFA5A3E0 1075 aa26.19■■□□□ 1.78
SQSTM1-215ENST00000514093 GTF2IP78347 998 aa26.19■■□□□ 1.78
SQSTM1-215ENST00000514093 IFT57Q9NWB7 429 aa26.19■■□□□ 1.78
SQSTM1-215ENST00000514093 ALDH1A1P00352 501 aa26.18■■□□□ 1.78
SQSTM1-215ENST00000514093 IFNL1Q8IU54 200 aa26.18■■□□□ 1.78
SQSTM1-215ENST00000514093 GCC1Q96CN9 775 aa26.18■■□□□ 1.78
SQSTM1-215ENST00000514093 SLC10A4Q96EP9 437 aa26.18■■□□□ 1.78
SQSTM1-215ENST00000514093 ZBED3Q96IU2 234 aaPredicted RBP26.18■■□□□ 1.78
SQSTM1-215ENST00000514093 PI4KAP2A4QPH2 592 aa26.17■■□□□ 1.78
SQSTM1-215ENST00000514093 GNAI1P63096 354 aa26.17■■□□□ 1.78
SQSTM1-215ENST00000514093 CWF19L2Q2TBE0 894 aaKnown RBP26.17■■□□□ 1.78
SQSTM1-215ENST00000514093 OTOP1Q7RTM1 612 aa26.17■■□□□ 1.78
SQSTM1-215ENST00000514093 PI4KAP1Q8N8J0 262 aa26.17■■□□□ 1.78
SQSTM1-215ENST00000514093 CLMNQ96JQ2 1002 aa26.17■■□□□ 1.78
SQSTM1-215ENST00000514093 LEMD3Q9Y2U8 911 aa26.17■■□□□ 1.78
SQSTM1-215ENST00000514093 ZNF804BA4D1E1 1349 aa26.16■■□□□ 1.78
SQSTM1-215ENST00000514093 HABP4Q5JVS0 413 aaKnown RBP26.16■■□□□ 1.78
SQSTM1-215ENST00000514093 CCDC30Q5VVM6 783 aa26.16■■□□□ 1.78
SQSTM1-215ENST00000514093 KSR2Q6VAB6 950 aa26.16■■□□□ 1.78
SQSTM1-215ENST00000514093 DEFB129Q9H1M3 183 aa26.16■■□□□ 1.78
SQSTM1-215ENST00000514093 MANSC4A6NHS7 340 aaPredicted RBP26.15■■□□□ 1.78
SQSTM1-215ENST00000514093 IGF2BP3O00425 579 aaKnown RBP eCLIP26.15■■□□□ 1.78
SQSTM1-215ENST00000514093 IGHMBP2P38935 993 aaKnown RBP26.15■■□□□ 1.78
SQSTM1-215ENST00000514093 PCDHAC2Q9Y5I4 1007 aa26.15■■□□□ 1.78
SQSTM1-215ENST00000514093 APAF1O14727 1248 aa26.14■■□□□ 1.78
SQSTM1-215ENST00000514093 UBE3BQ7Z3V4 1068 aa26.14■■□□□ 1.78
SQSTM1-215ENST00000514093 TSPYL6Q8N831 410 aa26.14■■□□□ 1.78
SQSTM1-215ENST00000514093 MKI67P46013 3256 aaKnown RBP26.13■■□□□ 1.77
SQSTM1-215ENST00000514093 MMP14P50281 582 aa26.13■■□□□ 1.77
SQSTM1-215ENST00000514093 INHBEP58166 350 aa26.13■■□□□ 1.77
SQSTM1-215ENST00000514093 DDX10Q13206 875 aaKnown RBP26.13■■□□□ 1.77
SQSTM1-215ENST00000514093 DLGAP5Q15398 846 aa26.13■■□□□ 1.77
SQSTM1-215ENST00000514093 WNK4Q96J92 1243 aa26.13■■□□□ 1.77
SQSTM1-215ENST00000514093 HTTP42858 3142 aa26.12■■□□□ 1.77
SQSTM1-215ENST00000514093 NEXNQ0ZGT2 675 aa26.12■■□□□ 1.77
SQSTM1-215ENST00000514093 MYH3P11055 1940 aa26.12■■□□□ 1.77
SQSTM1-215ENST00000514093 NEURL1BA8MQ27 555 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 H7C1W4 665 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 SNAP23O00161 211 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 ITGA6P23229 1130 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 INTS3Q68E01 1043 aaKnown RBP26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 CERS5Q8N5B7 392 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 CD99L2Q8TCZ2 262 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 ANKRD2Q9GZV1 360 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 SSC5DA1L4H1 1573 aa26.11■■□□□ 1.77
SQSTM1-215ENST00000514093 CLRN2A0PK11 232 aa26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 F8W031 263 aaPredicted RBP26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 PPP1R12BO60237 982 aaPredicted RBP26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 ZBTB48P10074 688 aaPredicted RBP26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 KCNJ4P48050 445 aa26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 CALD1Q05682 793 aaKnown RBP26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 MAP3K11Q16584 847 aa26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 MPHOSPH8Q99549 860 aa26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 CD209Q9NNX6 404 aa26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 PTPN22Q9Y2R2 807 aa26.1■■□□□ 1.77
SQSTM1-215ENST00000514093 CENPFP49454 3210 aa26.08■■□□□ 1.77
SQSTM1-215ENST00000514093 EN2P19622 333 aaPredicted RBP26.08■■□□□ 1.77
SQSTM1-215ENST00000514093 CHRNDQ07001 517 aa26.08■■□□□ 1.77
SQSTM1-215ENST00000514093 CRHR2Q13324 411 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 601.9 ms