RNA–Protein interactions for RNA: ENST00000512665.5

NEDD9-213, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-213ENST00000512665 SH3TC2Q8TF17 1288 aa13.08□□□□□ -0.32
NEDD9-213ENST00000512665 CELF1Q92879 486 aaKnown RBP13.08□□□□□ -0.32
NEDD9-213ENST00000512665 PTPN18Q99952 460 aa13.08□□□□□ -0.32
NEDD9-213ENST00000512665 USP17L3A6NCW0 530 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 USP17L4A6NCW7 530 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 U2SURPO15042 1029 aaKnown RBP13.07□□□□□ -0.32
NEDD9-213ENST00000512665 GJB1P08034 283 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 CAPN2P17655 700 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 USP17L1Q7RTZ2 530 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 PODNQ7Z5L7 613 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 OGFOD1Q8N543 542 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 MYO3BQ8WXR4 1341 aa13.07□□□□□ -0.32
NEDD9-213ENST00000512665 TTC28Q96AY4 2481 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 COL4A1P02462 1669 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 G3V3G9 751 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 MYCP01106 439 aaPredicted RBP13.06□□□□□ -0.32
NEDD9-213ENST00000512665 PRKAR2BP31323 418 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 DCAF8Q5TAQ9 597 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 Q7L0L9 218 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 PNISRQ8TF01 805 aaKnown RBP13.06□□□□□ -0.32
NEDD9-213ENST00000512665 GDF15Q99988 308 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 RSPH6AQ9H0K4 717 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 TRMT112Q9UI30 125 aaKnown RBP13.06□□□□□ -0.32
NEDD9-213ENST00000512665 PPP2R3BQ9Y5P8 575 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 EYSQ5T1H1 3165 aa13.06□□□□□ -0.32
NEDD9-213ENST00000512665 PPP1R12BO60237 982 aaPredicted RBP13.05□□□□□ -0.32
NEDD9-213ENST00000512665 PRKG1Q13976 671 aa13.05□□□□□ -0.32
NEDD9-213ENST00000512665 CLMNQ96JQ2 1002 aa13.05□□□□□ -0.32
NEDD9-213ENST00000512665 STAP2Q9UGK3 403 aa13.05□□□□□ -0.32
NEDD9-213ENST00000512665 PRUNE2Q8WUY3 3088 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 EVI5O60447 810 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 UFL1O94874 794 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 FARP2O94887 1054 aaPredicted RBP13.04□□□□□ -0.32
NEDD9-213ENST00000512665 COL9A1P20849 921 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 GJA5P36382 358 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 PLA2G5P39877 138 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 EIF4A1P60842 406 aaKnown RBP13.04□□□□□ -0.32
NEDD9-213ENST00000512665 MTFR1Q15390 333 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 ZFYVE28Q9HCC9 887 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 GGA1Q9UJY5 639 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 RPTORQ8N122 1335 aa13.04□□□□□ -0.32
NEDD9-213ENST00000512665 RPS8P62241 208 aaKnown RBP13.03□□□□□ -0.32
NEDD9-213ENST00000512665 LACTBP83111 547 aaPredicted RBP13.03□□□□□ -0.32
NEDD9-213ENST00000512665 KIF22Q14807 665 aa13.03□□□□□ -0.32
NEDD9-213ENST00000512665 ZBED3Q96IU2 234 aaPredicted RBP13.03□□□□□ -0.32
NEDD9-213ENST00000512665 MS4A4AQ96JQ5 239 aa13.03□□□□□ -0.32
NEDD9-213ENST00000512665 TAF1CQ15572 869 aaPredicted RBP13.02□□□□□ -0.33
NEDD9-213ENST00000512665 DACT2Q5SW24 774 aa13.02□□□□□ -0.33
NEDD9-213ENST00000512665 FAM109BQ6ICB4 259 aaPredicted RBP13.02□□□□□ -0.33
NEDD9-213ENST00000512665 DEFB129Q9H1M3 183 aa13.02□□□□□ -0.33
NEDD9-213ENST00000512665 ZCCHC17Q9NP64 241 aaKnown RBP13.02□□□□□ -0.33
NEDD9-213ENST00000512665 SASH1O94885 1247 aa13.01□□□□□ -0.33
NEDD9-213ENST00000512665 IREB2P48200 963 aaKnown RBP13.01□□□□□ -0.33
NEDD9-213ENST00000512665 DCTN1Q14203 1278 aa13.01□□□□□ -0.33
NEDD9-213ENST00000512665 PDIA6Q15084 440 aa13.01□□□□□ -0.33
NEDD9-213ENST00000512665 ANKRD13AQ8IZ07 590 aa13.01□□□□□ -0.33
NEDD9-213ENST00000512665 ANKIB1Q9P2G1 1089 aa13.01□□□□□ -0.33
NEDD9-213ENST00000512665 TLR2O60603 784 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 WDHD1O75717 1129 aaPredicted RBP13□□□□□ -0.33
NEDD9-213ENST00000512665 CCL5P13501 91 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 SUPT20HL1Q3ZLR7 823 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 STRIP1Q5VSL9 837 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 TDHQ8IZJ6 230 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 HELBQ8NG08 1087 aaPredicted RBP13□□□□□ -0.33
NEDD9-213ENST00000512665 U2AF1L4Q8WU68 220 aaKnown RBP13□□□□□ -0.33
NEDD9-213ENST00000512665 MIS18AQ9NYP9 233 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 FZD1Q9UP38 647 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 OTOFQ9HC10 1997 aa13□□□□□ -0.33
NEDD9-213ENST00000512665 ZSWIM8A7E2V4 1837 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 MED23Q9ULK4 1368 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 ZNF804BA4D1E1 1349 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 HOXD11P31277 338 aaPredicted RBP12.99□□□□□ -0.33
NEDD9-213ENST00000512665 GRK4P32298 578 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 BCAMP50895 628 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 BRI3BPQ8WY22 251 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 SYMPKQ92797 1274 aaKnown RBP12.99□□□□□ -0.33
NEDD9-213ENST00000512665 ARHGAP39Q9C0H5 1083 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 SRRDQ9UH36 339 aa12.99□□□□□ -0.33
NEDD9-213ENST00000512665 LAMA2P24043 3122 aaKnown RBP12.99□□□□□ -0.33
NEDD9-213ENST00000512665 XDHP47989 1333 aa12.98□□□□□ -0.33
NEDD9-213ENST00000512665 ECM29Q5VYK3 1845 aa12.98□□□□□ -0.33
NEDD9-213ENST00000512665 GTF2A2P52657 109 aa12.98□□□□□ -0.33
NEDD9-213ENST00000512665 OPTNQ96CV9 577 aa12.98□□□□□ -0.33
NEDD9-213ENST00000512665 RNF208Q9H0X6 261 aa12.98□□□□□ -0.33
NEDD9-213ENST00000512665 RIPOR2Q9Y4F9 1068 aa12.98□□□□□ -0.33
NEDD9-213ENST00000512665 COL2A1P02458 1487 aaPredicted RBP12.97□□□□□ -0.33
NEDD9-213ENST00000512665 SGPL1O95470 568 aa12.97□□□□□ -0.33
NEDD9-213ENST00000512665 UBXN2AP68543 259 aa12.97□□□□□ -0.33
NEDD9-213ENST00000512665 FAM43AQ8N2R8 423 aa12.97□□□□□ -0.33
NEDD9-213ENST00000512665 MTMR14Q8NCE2 650 aa12.97□□□□□ -0.33
NEDD9-213ENST00000512665 TRIM47Q96LD4 638 aa12.97□□□□□ -0.33
NEDD9-213ENST00000512665 GUCD1Q96NT3 240 aa12.97□□□□□ -0.33
NEDD9-213ENST00000512665 ALPK3Q96L96 1907 aa12.97□□□□□ -0.33
NEDD9-213ENST00000512665 FAM205AQ6ZU69 1335 aa12.96□□□□□ -0.33
NEDD9-213ENST00000512665 CCL15-CCL14A0A0B4J2E2 113 aa12.96□□□□□ -0.33
NEDD9-213ENST00000512665 POTEB2H3BUK9 544 aa12.96□□□□□ -0.33
NEDD9-213ENST00000512665 USP2O75604 605 aaPredicted RBP12.96□□□□□ -0.33
NEDD9-213ENST00000512665 ATP2B4P23634 1241 aa12.96□□□□□ -0.33
NEDD9-213ENST00000512665 HOXD10P28358 340 aa12.96□□□□□ -0.33
NEDD9-213ENST00000512665 CCL15Q16663 113 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms