RNA–Protein interactions for RNA: ENST00000512531.1

MSH3-203, Transcript of mutS homolog 3, humanhuman

TSL 5

Gene MSH3, Length 531 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-203ENST00000512531 CEP85Q6P2H3 762 aa11.62□□□□□ -0.55
MSH3-203ENST00000512531 DZIP3Q86Y13 1208 aaKnown RBP11.62□□□□□ -0.55
MSH3-203ENST00000512531 PROCA1Q8NCQ7 364 aaPredicted RBP11.62□□□□□ -0.55
MSH3-203ENST00000512531 SRCIN1Q9C0H9 1055 aa11.62□□□□□ -0.55
MSH3-203ENST00000512531 MIS18AQ9NYP9 233 aa11.62□□□□□ -0.55
MSH3-203ENST00000512531 DBF4Q9UBU7 674 aaPredicted RBP11.62□□□□□ -0.55
MSH3-203ENST00000512531 PCDHGA10Q9Y5H3 936 aa11.62□□□□□ -0.55
MSH3-203ENST00000512531 COL11A2P13942 1736 aaPredicted RBP11.62□□□□□ -0.55
MSH3-203ENST00000512531 SCN4AP35499 1836 aa11.61□□□□□ -0.55
MSH3-203ENST00000512531 NPHP1O15259 732 aa11.61□□□□□ -0.55
MSH3-203ENST00000512531 SNRPA1P09661 255 aaKnown RBP11.61□□□□□ -0.55
MSH3-203ENST00000512531 UBTFL1P0CB47 393 aaPredicted RBP11.61□□□□□ -0.55
MSH3-203ENST00000512531 NPR1P16066 1061 aa11.61□□□□□ -0.55
MSH3-203ENST00000512531 CCDC93Q567U6 631 aa11.61□□□□□ -0.55
MSH3-203ENST00000512531 LDHDQ86WU2 507 aa11.61□□□□□ -0.55
MSH3-203ENST00000512531 BCORQ6W2J9 1755 aa11.61□□□□□ -0.55
MSH3-203ENST00000512531 PASKQ96RG2 1323 aa11.6□□□□□ -0.55
MSH3-203ENST00000512531 SLX4Q8IY92 1834 aa11.6□□□□□ -0.55
MSH3-203ENST00000512531 RAB11FIP3O75154 756 aa11.6□□□□□ -0.55
MSH3-203ENST00000512531 DDNO94850 711 aaPredicted RBP11.6□□□□□ -0.55
MSH3-203ENST00000512531 TPTE2Q6XPS3 522 aa11.6□□□□□ -0.55
MSH3-203ENST00000512531 NBPF5PQ86XG9 351 aaPredicted RBP11.6□□□□□ -0.55
MSH3-203ENST00000512531 RTKN2Q8IZC4 609 aa11.6□□□□□ -0.55
MSH3-203ENST00000512531 POM121Q96HA1 1249 aa11.6□□□□□ -0.55
MSH3-203ENST00000512531 ZNF330Q9Y3S2 320 aaPredicted RBP11.6□□□□□ -0.55
MSH3-203ENST00000512531 CNTNAP1P78357 1384 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 REC8O95072 547 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 SLC34A2O95436 690 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 SSTR3P32745 418 aaPredicted RBP11.59□□□□□ -0.55
MSH3-203ENST00000512531 EIF4A1P60842 406 aaKnown RBP11.59□□□□□ -0.55
MSH3-203ENST00000512531 FKBP4Q02790 459 aaKnown RBP eCLIP11.59□□□□□ -0.55
MSH3-203ENST00000512531 KRT24Q2M2I5 525 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 CCDC82Q8N4S0 544 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 TAF1DQ9H5J8 278 aaPredicted RBP11.59□□□□□ -0.55
MSH3-203ENST00000512531 GPCPD1Q9NPB8 672 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 PRDM10Q9NQV6 1147 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 HYPKQ9NX55 129 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 USP16Q9Y5T5 823 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 KDM3BQ7LBC6 1761 aa11.59□□□□□ -0.55
MSH3-203ENST00000512531 PTMSP20962 102 aa11.58□□□□□ -0.56
MSH3-203ENST00000512531 ALDH1B1P30837 517 aa11.58□□□□□ -0.56
MSH3-203ENST00000512531 RBM25P49756 843 aaKnown RBP11.58□□□□□ -0.56
MSH3-203ENST00000512531 CLCN6P51797 869 aa11.58□□□□□ -0.56
MSH3-203ENST00000512531 GRIPAP1Q4V328 841 aa11.58□□□□□ -0.56
MSH3-203ENST00000512531 CC2D2BQ6DHV5 1058 aa11.58□□□□□ -0.56
MSH3-203ENST00000512531 MEIS3Q99687 375 aa11.58□□□□□ -0.56
MSH3-203ENST00000512531 LRRCC1Q9C099 1032 aa11.58□□□□□ -0.56
MSH3-203ENST00000512531 TMEM88BA6NKF7 163 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 KCNQ3O43525 872 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 ALDH1L1O75891 902 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 ITGBL1O95965 494 aaPredicted RBP11.57□□□□□ -0.56
MSH3-203ENST00000512531 EIF2S2P20042 333 aaKnown RBP11.57□□□□□ -0.56
MSH3-203ENST00000512531 MCCP23508 829 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 CLCN1P35523 988 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 ATP8B2P98198 1209 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 SKIV2LQ15477 1246 aaKnown RBP11.57□□□□□ -0.56
MSH3-203ENST00000512531 TTC22Q5TAA0 569 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 PNMA8AQ86V59 439 aaPredicted RBP11.57□□□□□ -0.56
MSH3-203ENST00000512531 SIRT2Q8IXJ6 389 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 CCDC24Q8N4L8 307 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 DNAAF4Q8WXU2 420 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 AOX1Q06278 1338 aa11.57□□□□□ -0.56
MSH3-203ENST00000512531 FZD9O00144 591 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 MAP3K7O43318 606 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 HSP90AA1P07900 732 aaKnown RBP11.56□□□□□ -0.56
MSH3-203ENST00000512531 NEXNQ0ZGT2 675 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 ERC1Q8IUD2 1116 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 SNX21Q969T3 373 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 GPATCH3Q96I76 525 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 PSMD1Q99460 953 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 EPAS1Q99814 870 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 FAM217BQ9NTX9 383 aaPredicted RBP11.56□□□□□ -0.56
MSH3-203ENST00000512531 MKRN1Q9UHC7 482 aaKnown RBP11.56□□□□□ -0.56
MSH3-203ENST00000512531 HACL1Q9UJ83 578 aa11.56□□□□□ -0.56
MSH3-203ENST00000512531 RIC1Q4ADV7 1423 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 NBPF26B4DH59 902 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 ERVV-1B6SEH8 477 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 F6X3S4 739 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 POTEIP0CG38 1075 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 POTEJP0CG39 1038 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 CRY2Q49AN0 593 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 NBPF10Q6P3W6 841 aaKnown RBP11.55□□□□□ -0.56
MSH3-203ENST00000512531 G2E3Q7L622 706 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 PLEKHM2Q8IWE5 1019 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 GPC2Q8N158 579 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 NBPF15Q8N660 670 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 BEGAINQ9BUH8 593 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 NYXQ9GZU5 481 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 OSBPL3Q9H4L5 887 aa11.55□□□□□ -0.56
MSH3-203ENST00000512531 NIP7Q9Y221 180 aaKnown RBP eCLIP11.55□□□□□ -0.56
MSH3-203ENST00000512531 IBTKQ9P2D0 1353 aaPredicted RBP11.54□□□□□ -0.56
MSH3-203ENST00000512531 ADAMTSL1Q8N6G6 1762 aa11.54□□□□□ -0.56
MSH3-203ENST00000512531 SNED1Q8TER0 1413 aa11.54□□□□□ -0.56
MSH3-203ENST00000512531 SEC24BO95487 1268 aa11.54□□□□□ -0.56
MSH3-203ENST00000512531 EPHX2P34913 555 aa11.54□□□□□ -0.56
MSH3-203ENST00000512531 IARSP41252 1262 aaKnown RBP11.54□□□□□ -0.56
MSH3-203ENST00000512531 CTCFP49711 727 aaPredicted RBP11.54□□□□□ -0.56
MSH3-203ENST00000512531 TBC1D9Q6ZT07 1266 aa11.54□□□□□ -0.56
MSH3-203ENST00000512531 METTL3Q86U44 580 aaKnown RBP11.54□□□□□ -0.56
MSH3-203ENST00000512531 NECTIN2Q92692 538 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms