RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 KIF4AO95239 1232 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 GLB1P16278 677 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 XKR5Q6UX68 686 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 CEP120Q8N960 986 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 ASAP3Q8TDY4 903 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 SNX29Q8TEQ0 813 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 SLC7A3Q8WY07 619 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 CCDC87Q9NVE4 849 aa4.93□□□□□ -1.62
LIMCH1-212ENST00000511424 SCO2A0A1W2PP80 73 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 PDE2AO00408 941 aaPredicted RBP4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 DLL1O00548 723 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 EREGO14944 169 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 NDUFB5O43674 189 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 TNFRSF21O75509 655 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 TRPA1O75762 1119 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 EDN3P14138 238 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 ACPPP15309 386 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 NOS3P29474 1203 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 SETDB1Q15047 1291 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 POP1Q99575 1024 aaKnown RBP4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 OSMRQ99650 979 aa4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 FOXD3Q9UJU5 478 aaPredicted RBP4.92□□□□□ -1.62
LIMCH1-212ENST00000511424 FSCN2O14926 492 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 DYRK3O43781 588 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 FZD6O60353 706 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 ICMTO60725 284 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 EPHA1P21709 976 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 CD68P34810 354 aaPredicted RBP4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 ARL4DP49703 201 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 DUOXA2Q1HG44 320 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 RSPO4Q2I0M5 234 aaPredicted RBP4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 ZMYM1Q5SVZ6 1142 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 ACAD11Q709F0 780 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 AGGF1Q8N302 714 aaeCLIP4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 CCER1Q8TC90 406 aaPredicted RBP4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 SEC31BQ9NQW1 1179 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 DZANK1Q9NVP4 752 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 EGFL7Q9UHF1 273 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 SALL4Q9UJQ4 1053 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 AMOTL2Q9Y2J4 779 aa4.91□□□□□ -1.62
LIMCH1-212ENST00000511424 POLR3DP05423 398 aaPredicted RBP4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 NEFLP07196 543 aa4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 NPR3P17342 541 aa4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 KLHL23Q8NBE8 558 aa4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 GALNT11Q8NCW6 608 aa4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 CHRDQ9H2X0 955 aa4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 BIN2Q9UBW5 565 aaPredicted RBP4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.9□□□□□ -1.63
LIMCH1-212ENST00000511424 F8W735 103 aaPredicted RBP4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 H3BRJ5 948 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 SART1O43290 800 aaKnown RBP4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 NLRP12P59046 1061 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 PDE3BQ13370 1112 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 PRSS36Q5K4E3 855 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 NKAPLQ5M9Q1 402 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 ILDR2Q71H61 639 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 HHIPQ96QV1 700 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 ZKSCAN3Q9BRR0 538 aa4.89□□□□□ -1.63
LIMCH1-212ENST00000511424 DDX3YO15523 660 aaKnown RBP4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 H2AFB1P0C5Y9 115 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 H2AFB2P0C5Z0 115 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 PIP4K2BP78356 416 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 IKBKEQ14164 716 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 GJD3Q8N144 294 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 TMEM130Q8N3G9 435 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 TMEM102Q8N9M5 508 aaPredicted RBP4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 BSNDQ8WZ55 320 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 KLHDC7BQ96G42 594 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 MEGF10Q96KG7 1140 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 USP26Q9BXU7 913 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 CEP41Q9BYV8 373 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 ADAM19Q9H013 955 aa4.88□□□□□ -1.63
LIMCH1-212ENST00000511424 C19orf57Q0VDD7 668 aa4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 FOXD4L6Q3SYB3 417 aaPredicted RBP4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 ADAMTSL4Q6UY14 1074 aa4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 FOXD4L3Q6VB84 417 aaPredicted RBP4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 NXPE3Q969Y0 559 aa4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 ZFYVE28Q9HCC9 887 aa4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 LATS2Q9NRM7 1088 aa4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 KCNK4Q9NYG8 393 aa4.87□□□□□ -1.63
LIMCH1-212ENST00000511424 NFKBIEO00221 500 aa4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 WISP1O95388 367 aa4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 FDX2Q6P4F2 183 aa4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 PRR23CQ6ZRP0 262 aa4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 UBASH3BQ8TF42 649 aa4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 WNT8BQ93098 351 aa4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 UTP4Q969X6 686 aaKnown RBP4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 OSGEPQ9NPF4 335 aa4.86□□□□□ -1.63
LIMCH1-212ENST00000511424 METTL12A8MUP2 240 aa4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 DHX15O43143 795 aaKnown RBP4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 GAS2O43903 313 aaKnown RBP4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 CPNE3O75131 537 aaKnown RBP4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 ARHGAP4P98171 946 aa4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 GSTM4Q03013 218 aa4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 ORC1Q13415 861 aa4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 DZIP1LQ8IYY4 767 aaKnown RBP4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 Q8N3U1 123 aa4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 FOXD4L4Q8WXT5 416 aaPredicted RBP4.85□□□□□ -1.63
LIMCH1-212ENST00000511424 RUSC1Q9BVN2 902 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms