RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 CIAO1O76071 339 aa14.16□□□□□ -0.14
LIMCH1-210ENST00000509454 DDNO94850 711 aaPredicted RBP14.16□□□□□ -0.14
LIMCH1-210ENST00000509454 KLRK1P26718 216 aa14.16□□□□□ -0.14
LIMCH1-210ENST00000509454 IL15P40933 162 aaPredicted RBP14.16□□□□□ -0.14
LIMCH1-210ENST00000509454 FBXO3Q9UK99 471 aa14.16□□□□□ -0.14
LIMCH1-210ENST00000509454 A0A1B0GUL6 1792 aa14.16□□□□□ -0.14
LIMCH1-210ENST00000509454 HMMRO75330 724 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 PDE8BO95263 885 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 UBE4AQ14139 1066 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 TNIP1Q15025 636 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 CIAPIN1Q6FI81 312 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 ATG9AQ7Z3C6 839 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 ZNF804AQ7Z570 1209 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 VPS37DQ86XT2 251 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 SLC5A1P13866 664 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 CXCL9Q07325 125 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 POLA2Q14181 598 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 PUM3Q15397 648 aaKnown RBP14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 TXNRD3Q86VQ6 643 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 RPAP2Q8IXW5 612 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 SSH3Q8TE77 659 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 BCL11AQ9H165 835 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 RRAGCQ9HB90 399 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 NMRK2Q9NPI5 230 aa14.15□□□□□ -0.14
LIMCH1-210ENST00000509454 YDJCA8MPS7 323 aa14.14□□□□□ -0.15
LIMCH1-210ENST00000509454 IFIT1P09914 478 aaKnown RBP14.14□□□□□ -0.15
LIMCH1-210ENST00000509454 ATP2B3Q16720 1220 aa14.14□□□□□ -0.15
LIMCH1-210ENST00000509454 GPC2Q8N158 579 aa14.14□□□□□ -0.15
LIMCH1-210ENST00000509454 COA1Q9GZY4 146 aa14.14□□□□□ -0.15
LIMCH1-210ENST00000509454 APBB1O00213 710 aa14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 FRAT2O75474 233 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 LMOD1P29536 600 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 GYG1P46976 350 aa14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 IRX6P78412 446 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 TFCP2Q12800 502 aa14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 CAVIN4Q5BKX8 364 aa14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 C16orf71Q8IYS4 520 aaPredicted RBP14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 KCNQ5Q9NR82 932 aa14.13□□□□□ -0.15
LIMCH1-210ENST00000509454 PSMD14O00487 310 aa14.12□□□□□ -0.15
LIMCH1-210ENST00000509454 HIBADHP31937 336 aaKnown RBP14.12□□□□□ -0.15
LIMCH1-210ENST00000509454 PODNQ7Z5L7 613 aa14.12□□□□□ -0.15
LIMCH1-210ENST00000509454 VGLL2Q8N8G2 317 aa14.12□□□□□ -0.15
LIMCH1-210ENST00000509454 LPIN2Q92539 896 aa14.12□□□□□ -0.15
LIMCH1-210ENST00000509454 EXOC6BQ9Y2D4 811 aa14.12□□□□□ -0.15
LIMCH1-210ENST00000509454 GMPSP49915 693 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-210ENST00000509454 NEUROD6Q96NK8 337 aa14.11□□□□□ -0.15
LIMCH1-210ENST00000509454 CD209Q9NNX6 404 aa14.11□□□□□ -0.15
LIMCH1-210ENST00000509454 AKAP2Q9Y2D5 859 aa14.11□□□□□ -0.15
LIMCH1-210ENST00000509454 IQCA1LA6NCM1 817 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 USP17L3A6NCW0 530 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 USP17L4A6NCW7 530 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 VEGFAP15692 232 aaPredicted RBP14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 HSP90AB4PQ58FF6 505 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 GORABQ5T7V8 394 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 C15orf52Q6ZUT6 534 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 USP17L1Q7RTZ2 530 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 IQSEC3Q9UPP2 1182 aaPredicted RBP14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 JAG2Q9Y219 1238 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 FGFR2P21802 821 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 BCAMP50895 628 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 GTF2IP78347 998 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 EXOC6Q8TAG9 804 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 FAM84BQ96KN1 310 aaPredicted RBP14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 HACL1Q9UJ83 578 aa14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 ZBTB12Q9Y330 459 aaPredicted RBP14.1□□□□□ -0.15
LIMCH1-210ENST00000509454 CENPBP07199 599 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 TIMM10P62072 90 aa14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 CHAF1AQ13111 956 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 EAPPQ56P03 285 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 TTLL5Q6EMB2 1281 aa14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 ERC1Q8IUD2 1116 aa14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 SIRT2Q8IXJ6 389 aa14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 L3MBTL3Q96JM7 780 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 NOP58Q9Y2X3 529 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-210ENST00000509454 WDR90Q96KV7 1748 aa14.08□□□□□ -0.15
LIMCH1-210ENST00000509454 SCN9AQ15858 1988 aa14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 A0A1B0GUL7 405 aa14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 SASH1O94885 1247 aa14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 ADORA1P30542 326 aa14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 RSBN1LQ6PCB5 846 aaPredicted RBP14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 MXD3Q9BW11 206 aa14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 GNL3LQ9NVN8 582 aaKnown RBP14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 IRS2Q9Y4H2 1338 aa14.08□□□□□ -0.16
LIMCH1-210ENST00000509454 H7C1D1 291 aa14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 VIL1P09327 827 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 IL1R1P14778 569 aa14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 EPHX2P34913 555 aa14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 EPS15P42566 896 aa14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 FBXO33Q7Z6M2 555 aa14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 MICALL2Q8IY33 904 aa14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 CLEC11AQ9Y240 323 aa14.07□□□□□ -0.16
LIMCH1-210ENST00000509454 KIF3CO14782 793 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 RPS12P25398 132 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 SCNN1DP51172 638 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 TNNI3KQ59H18 835 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 STRIP1Q5VSL9 837 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 XAGE2Q96GT9 111 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 TAF1DQ9H5J8 278 aaPredicted RBP14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 GPRC5DQ9NZD1 345 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 CNOT7Q9UIV1 285 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms