RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 ATG9AQ7Z3C6 839 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 PELP1Q8IZL8 1130 aaKnown RBP10.45□□□□□ -0.74
PDGFC-205ENST00000506880 LARGE2Q8N3Y3 721 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 JARID2Q92833 1246 aaPredicted RBP10.45□□□□□ -0.74
PDGFC-205ENST00000506880 ZNF512BQ96KM6 892 aaPredicted RBP10.45□□□□□ -0.74
PDGFC-205ENST00000506880 GNL3LQ9NVN8 582 aaKnown RBP10.45□□□□□ -0.74
PDGFC-205ENST00000506880 SUPT16HQ9Y5B9 1047 aaKnown RBP10.45□□□□□ -0.74
PDGFC-205ENST00000506880 WDR90Q96KV7 1748 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 C6orf229H3BNL8 230 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 IL1R1P14778 569 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 GPC2Q8N158 579 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 TBC1D22AQ8WUA7 517 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 L3MBTL3Q96JM7 780 aaPredicted RBP10.44□□□□□ -0.74
PDGFC-205ENST00000506880 RWDD1Q9H446 243 aaPredicted RBP10.44□□□□□ -0.74
PDGFC-205ENST00000506880 RNF181Q9P0P0 153 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 POLLQ9UGP5 575 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 TNNQ9UQP3 1299 aa10.44□□□□□ -0.74
PDGFC-205ENST00000506880 IRS2Q9Y4H2 1338 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 PNMA6EA0A0J9YXQ4 647 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 IQCA1LA6NCM1 817 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 GLTPD2A6NH11 291 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 G3V3G9 751 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 SURF6O75683 361 aaKnown RBP10.43□□□□□ -0.74
PDGFC-205ENST00000506880 NEFLP07196 543 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 DCAF8Q5TAQ9 597 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 C20orf194Q5TEA3 1177 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 STRIP1Q5VSL9 837 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 C9orf131Q5VYM1 1079 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 ZGPATQ8N5A5 531 aaKnown RBP10.43□□□□□ -0.74
PDGFC-205ENST00000506880 AGBL3Q8NEM8 1001 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 DPF2Q92785 391 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 DCTPP1Q9H773 170 aa10.43□□□□□ -0.74
PDGFC-205ENST00000506880 FAM205AQ6ZU69 1335 aa10.42□□□□□ -0.74
PDGFC-205ENST00000506880 SASH1O94885 1247 aa10.42□□□□□ -0.74
PDGFC-205ENST00000506880 UQCRFS1P1P0C7P4 283 aa10.42□□□□□ -0.74
PDGFC-205ENST00000506880 HIBADHP31937 336 aaKnown RBP10.42□□□□□ -0.74
PDGFC-205ENST00000506880 ATP2B3Q16720 1220 aa10.42□□□□□ -0.74
PDGFC-205ENST00000506880 FBXO33Q7Z6M2 555 aa10.42□□□□□ -0.74
PDGFC-205ENST00000506880 CLASRPQ8N2M8 674 aaKnown RBP10.42□□□□□ -0.74
PDGFC-205ENST00000506880 CCDC85AQ96PX6 553 aaPredicted RBP10.42□□□□□ -0.74
PDGFC-205ENST00000506880 MRIQ9BWK5 157 aa10.42□□□□□ -0.74
PDGFC-205ENST00000506880 MAST3O60307 1309 aa10.41□□□□□ -0.74
PDGFC-205ENST00000506880 VIL1P09327 827 aaKnown RBP10.41□□□□□ -0.74
PDGFC-205ENST00000506880 OS9Q13438 667 aaPredicted RBP10.41□□□□□ -0.74
PDGFC-205ENST00000506880 LRRC24Q50LG9 513 aa10.41□□□□□ -0.74
PDGFC-205ENST00000506880 VPS37DQ86XT2 251 aa10.41□□□□□ -0.74
PDGFC-205ENST00000506880 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.41□□□□□ -0.74
PDGFC-205ENST00000506880 CRBNQ96SW2 442 aa10.41□□□□□ -0.74
PDGFC-205ENST00000506880 ZNF277Q9NRM2 450 aaPredicted RBP10.41□□□□□ -0.74
PDGFC-205ENST00000506880 ZBTB47Q9UFB7 747 aaPredicted RBP10.41□□□□□ -0.74
PDGFC-205ENST00000506880 COL4A1P02462 1669 aa10.41□□□□□ -0.74
PDGFC-205ENST00000506880 SALL1Q9NSC2 1324 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 USP17L3A6NCW0 530 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 USP17L4A6NCW7 530 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 MAP4K4O95819 1239 aaPredicted RBP10.4□□□□□ -0.74
PDGFC-205ENST00000506880 HDLBPQ00341 1268 aaKnown RBP10.4□□□□□ -0.74
PDGFC-205ENST00000506880 AOC3Q16853 763 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 CIAPIN1Q6FI81 312 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 USP17L1Q7RTZ2 530 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 CERS3Q8IU89 383 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 SIRT2Q8IXJ6 389 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 TDRD7Q8NHU6 1098 aaKnown RBP10.4□□□□□ -0.74
PDGFC-205ENST00000506880 WDR66Q8TBY9 1149 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 ZNF594Q96JF6 807 aaPredicted RBP10.4□□□□□ -0.74
PDGFC-205ENST00000506880 LRRCC1Q9C099 1032 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 CD209Q9NNX6 404 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 DENND2AQ9ULE3 1009 aa10.4□□□□□ -0.74
PDGFC-205ENST00000506880 SCN9AQ15858 1988 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 ECE2O60344 883 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 RASSF7Q02833 373 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 TNNI3KQ59H18 835 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 CCDC158Q5M9N0 1113 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 PNMA8AQ86V59 439 aaPredicted RBP10.39□□□□□ -0.75
PDGFC-205ENST00000506880 SMC5Q8IY18 1101 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 RHPN1Q8TCX5 695 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 GPATCH3Q96I76 525 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 FAM84BQ96KN1 310 aaPredicted RBP10.39□□□□□ -0.75
PDGFC-205ENST00000506880 PUS3Q9BZE2 481 aaKnown RBP10.39□□□□□ -0.75
PDGFC-205ENST00000506880 FPGT-TNNI3KV9GXZ4 949 aa10.39□□□□□ -0.75
PDGFC-205ENST00000506880 ZNF646O15015 1829 aaPredicted RBP10.39□□□□□ -0.75
PDGFC-205ENST00000506880 A0A1B0GUL7 405 aa10.38□□□□□ -0.75
PDGFC-205ENST00000506880 VEGFAP15692 232 aaPredicted RBP10.38□□□□□ -0.75
PDGFC-205ENST00000506880 ARID4AP29374 1257 aaPredicted RBP10.38□□□□□ -0.75
PDGFC-205ENST00000506880 LMOD1P29536 600 aaPredicted RBP10.38□□□□□ -0.75
PDGFC-205ENST00000506880 SPTY2D1Q68D10 685 aaPredicted RBP10.38□□□□□ -0.75
PDGFC-205ENST00000506880 SLF2Q8IX21 1173 aa10.38□□□□□ -0.75
PDGFC-205ENST00000506880 ZC3H15Q8WU90 426 aaKnown RBP10.38□□□□□ -0.75
PDGFC-205ENST00000506880 SIL1Q9H173 461 aa10.38□□□□□ -0.75
PDGFC-205ENST00000506880 ZNF219Q9P2Y4 722 aaPredicted RBP10.38□□□□□ -0.75
PDGFC-205ENST00000506880 PA2G4Q9UQ80 394 aaKnown RBP10.38□□□□□ -0.75
PDGFC-205ENST00000506880 ECM29Q5VYK3 1845 aa10.37□□□□□ -0.75
PDGFC-205ENST00000506880 AKAP11Q9UKA4 1901 aa10.37□□□□□ -0.75
PDGFC-205ENST00000506880 TAF5LO75529 589 aa10.37□□□□□ -0.75
PDGFC-205ENST00000506880 YY1P25490 414 aa10.37□□□□□ -0.75
PDGFC-205ENST00000506880 CXCL9Q07325 125 aa10.37□□□□□ -0.75
PDGFC-205ENST00000506880 TFCP2Q12800 502 aa10.37□□□□□ -0.75
PDGFC-205ENST00000506880 LRRFIP1Q32MZ4 808 aaKnown RBP10.37□□□□□ -0.75
PDGFC-205ENST00000506880 TTLL5Q6EMB2 1281 aa10.37□□□□□ -0.75
PDGFC-205ENST00000506880 RSBN1LQ6PCB5 846 aaPredicted RBP10.37□□□□□ -0.75
PDGFC-205ENST00000506880 OGFOD1Q8N543 542 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms