RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 DCTN4Q9UJW0 460 aa10.6□□□□□ -0.71
SF3B1-212ENST00000496458 PATL2C9JE40 543 aaKnown RBP10.59□□□□□ -0.71
SF3B1-212ENST00000496458 NFKBIEO00221 500 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 IGHA1P01876 353 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 CDC27P30260 824 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 ORC1Q13415 861 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 SHISA2Q6UWI4 295 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 CACTIN-AS1Q8N1I8 211 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 NACC1Q96RE7 527 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 OSMRQ99650 979 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 ZKSCAN3Q9BRR0 538 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 LATS2Q9NRM7 1088 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 PPME1Q9Y570 386 aa10.59□□□□□ -0.71
SF3B1-212ENST00000496458 PDE2AO00408 941 aaPredicted RBP10.58□□□□□ -0.72
SF3B1-212ENST00000496458 DEAF1O75398 565 aaPredicted RBP10.58□□□□□ -0.72
SF3B1-212ENST00000496458 IGHA2P01877 340 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 PROCP04070 461 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 NEFLP07196 543 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 PTPRAP18433 802 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 MAPK1P28482 360 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 CDC25BP30305 580 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 TXNDC11Q6PKC3 985 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 FBXO11Q86XK2 927 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 NIF3L1Q9GZT8 377 aa10.58□□□□□ -0.72
SF3B1-212ENST00000496458 SH2B1Q9NRF2 756 aaPredicted RBP10.58□□□□□ -0.72
SF3B1-212ENST00000496458 SELPP16109 830 aa10.57□□□□□ -0.72
SF3B1-212ENST00000496458 USPL1Q5W0Q7 1092 aa10.57□□□□□ -0.72
SF3B1-212ENST00000496458 TMC7Q7Z402 723 aa10.57□□□□□ -0.72
SF3B1-212ENST00000496458 DMRTB1Q96MA1 342 aa10.57□□□□□ -0.72
SF3B1-212ENST00000496458 FAM177BA6PVY3 158 aa10.56□□□□□ -0.72
SF3B1-212ENST00000496458 LINC01387J3KSC0 135 aa10.56□□□□□ -0.72
SF3B1-212ENST00000496458 PEAR1Q5VY43 1037 aaPredicted RBP10.56□□□□□ -0.72
SF3B1-212ENST00000496458 MUC3BQ9H195 1237 aa10.56□□□□□ -0.72
SF3B1-212ENST00000496458 CPNE3O75131 537 aaKnown RBP10.55□□□□□ -0.72
SF3B1-212ENST00000496458 EPHA1P21709 976 aa10.55□□□□□ -0.72
SF3B1-212ENST00000496458 SETDB1Q15047 1291 aa10.55□□□□□ -0.72
SF3B1-212ENST00000496458 GALNT12Q8IXK2 581 aa10.55□□□□□ -0.72
SF3B1-212ENST00000496458 TMEM102Q8N9M5 508 aaPredicted RBP10.55□□□□□ -0.72
SF3B1-212ENST00000496458 ADAM19Q9H013 955 aa10.55□□□□□ -0.72
SF3B1-212ENST00000496458 C9orf172C9J069 976 aa10.54□□□□□ -0.72
SF3B1-212ENST00000496458 SRA1Q9HD15 236 aaKnown RBP10.54□□□□□ -0.72
SF3B1-212ENST00000496458 USP21Q9UK80 565 aa10.54□□□□□ -0.72
SF3B1-212ENST00000496458 EIF1AYO14602 144 aaKnown RBP10.53□□□□□ -0.72
SF3B1-212ENST00000496458 MAP4K3Q8IVH8 894 aa10.53□□□□□ -0.72
SF3B1-212ENST00000496458 NXPE3Q969Y0 559 aa10.53□□□□□ -0.72
SF3B1-212ENST00000496458 ALKBH8Q96BT7 664 aaKnown RBP10.53□□□□□ -0.72
SF3B1-212ENST00000496458 LENG1Q96BZ8 264 aaPredicted RBP10.53□□□□□ -0.72
SF3B1-212ENST00000496458 DLL1O00548 723 aa10.52□□□□□ -0.73
SF3B1-212ENST00000496458 GATA4P43694 442 aa10.52□□□□□ -0.73
SF3B1-212ENST00000496458 ASAP3Q8TDY4 903 aa10.52□□□□□ -0.73
SF3B1-212ENST00000496458 CARD10Q9BWT7 1032 aa10.52□□□□□ -0.73
SF3B1-212ENST00000496458 NPHS2Q9NP85 383 aa10.52□□□□□ -0.73
SF3B1-212ENST00000496458 A0A1W2PP55 124 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 CABP4P57796 275 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 NRG1Q02297 640 aaPredicted RBP10.51□□□□□ -0.73
SF3B1-212ENST00000496458 ADGRE1Q14246 886 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 MBTPS1Q14703 1052 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 FAM117BQ6P1L5 589 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 IGF2-ASQ6U949 168 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 GALNT11Q8NCW6 608 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 DNAJC25Q9H1X3 360 aa10.51□□□□□ -0.73
SF3B1-212ENST00000496458 H3BRJ5 948 aa10.5□□□□□ -0.73
SF3B1-212ENST00000496458 BSNDQ8WZ55 320 aa10.5□□□□□ -0.73
SF3B1-212ENST00000496458 CSRNP1Q96S65 589 aa10.5□□□□□ -0.73
SF3B1-212ENST00000496458 BHLHE41Q9C0J9 482 aaPredicted RBP10.5□□□□□ -0.73
SF3B1-212ENST00000496458 SOX13Q9UN79 622 aa10.5□□□□□ -0.73
SF3B1-212ENST00000496458 METTL12A8MUP2 240 aa10.49□□□□□ -0.73
SF3B1-212ENST00000496458 FSCN2O14926 492 aa10.49□□□□□ -0.73
SF3B1-212ENST00000496458 DCAF11Q8TEB1 546 aa10.49□□□□□ -0.73
SF3B1-212ENST00000496458 CCDC74AQ96AQ1 378 aa10.49□□□□□ -0.73
SF3B1-212ENST00000496458 LIN7BQ9HAP6 207 aa10.48□□□□□ -0.73
SF3B1-212ENST00000496458 TREHO43280 583 aa10.47□□□□□ -0.73
SF3B1-212ENST00000496458 DSC3Q14574 896 aa10.47□□□□□ -0.73
SF3B1-212ENST00000496458 FOXD4L6Q3SYB3 417 aaPredicted RBP10.47□□□□□ -0.73
SF3B1-212ENST00000496458 FOXD4L3Q6VB84 417 aaPredicted RBP10.47□□□□□ -0.73
SF3B1-212ENST00000496458 TXNRD3Q86VQ6 643 aa10.47□□□□□ -0.73
SF3B1-212ENST00000496458 ZSCAN29Q8IWY8 852 aaPredicted RBP10.47□□□□□ -0.73
SF3B1-212ENST00000496458 SLC7A3Q8WY07 619 aa10.47□□□□□ -0.73
SF3B1-212ENST00000496458 EHD4Q9H223 541 aa10.47□□□□□ -0.73
SF3B1-212ENST00000496458 SEC31BQ9NQW1 1179 aa10.47□□□□□ -0.73
SF3B1-212ENST00000496458 CD68P34810 354 aaPredicted RBP10.46□□□□□ -0.73
SF3B1-212ENST00000496458 PLCB3Q01970 1234 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 DOC2BQ14184 412 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 KIAA0319Q5VV43 1072 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 VN1R5Q7Z5H4 357 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 CCNJLQ8IV13 435 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 KLHL23Q8NBE8 558 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 ASB16Q96NS5 453 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 TCF12Q99081 682 aa10.46□□□□□ -0.73
SF3B1-212ENST00000496458 MRPL18Q9H0U6 180 aaKnown RBP10.46□□□□□ -0.73
SF3B1-212ENST00000496458 PNMA6FA0A0J9YX94 578 aa10.45□□□□□ -0.74
SF3B1-212ENST00000496458 TM4SF5O14894 197 aa10.45□□□□□ -0.74
SF3B1-212ENST00000496458 PIP4K2BP78356 416 aa10.45□□□□□ -0.74
SF3B1-212ENST00000496458 SND1Q7KZF4 910 aaKnown RBP eCLIP10.45□□□□□ -0.74
SF3B1-212ENST00000496458 KLHDC7BQ96G42 594 aa10.45□□□□□ -0.74
SF3B1-212ENST00000496458 KCNK4Q9NYG8 393 aa10.45□□□□□ -0.74
SF3B1-212ENST00000496458 GADD45BO75293 160 aaPredicted RBP10.44□□□□□ -0.74
SF3B1-212ENST00000496458 GRIA4P48058 902 aa10.44□□□□□ -0.74
SF3B1-212ENST00000496458 IREB2P48200 963 aaKnown RBP10.44□□□□□ -0.74
SF3B1-212ENST00000496458 IKBKEQ14164 716 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms