RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 MYO3BQ8WXR4 1341 aa17.72■□□□□ 0.43
GPNMB-213ENST00000492512 MYH3P11055 1940 aa17.72■□□□□ 0.43
GPNMB-213ENST00000492512 WTIPA6NIX2 430 aaPredicted RBP17.72■□□□□ 0.43
GPNMB-213ENST00000492512 WNT10BO00744 389 aa17.72■□□□□ 0.43
GPNMB-213ENST00000492512 FKTNO75072 461 aa17.72■□□□□ 0.43
GPNMB-213ENST00000492512 DACT2Q5SW24 774 aa17.72■□□□□ 0.43
GPNMB-213ENST00000492512 ARMC9Q7Z3E5 817 aa17.72■□□□□ 0.43
GPNMB-213ENST00000492512 MXD3Q9BW11 206 aa17.72■□□□□ 0.43
GPNMB-213ENST00000492512 ZNF646O15015 1829 aaPredicted RBP17.71■□□□□ 0.43
GPNMB-213ENST00000492512 ELL2O00472 640 aaPredicted RBP17.71■□□□□ 0.43
GPNMB-213ENST00000492512 DDX58O95786 925 aaKnown RBP17.71■□□□□ 0.43
GPNMB-213ENST00000492512 CTSWP56202 376 aa17.71■□□□□ 0.43
GPNMB-213ENST00000492512 METTL22Q9BUU2 404 aaPredicted RBP17.71■□□□□ 0.43
GPNMB-213ENST00000492512 SASH1O94885 1247 aa17.7■□□□□ 0.42
GPNMB-213ENST00000492512 PTPN12Q05209 780 aaKnown RBP17.7■□□□□ 0.42
GPNMB-213ENST00000492512 PRKG1Q13976 671 aa17.7■□□□□ 0.42
GPNMB-213ENST00000492512 STRIP1Q5VSL9 837 aa17.7■□□□□ 0.42
GPNMB-213ENST00000492512 GCC1Q96CN9 775 aa17.7■□□□□ 0.42
GPNMB-213ENST00000492512 CFHR5Q9BXR6 569 aa17.7■□□□□ 0.42
GPNMB-213ENST00000492512 BSDC1Q9NW68 430 aaPredicted RBP17.7■□□□□ 0.42
GPNMB-213ENST00000492512 MINPP1Q9UNW1 487 aa17.7■□□□□ 0.42
GPNMB-213ENST00000492512 MYBBP1AQ9BQG0 1328 aaKnown RBP17.7■□□□□ 0.42
GPNMB-213ENST00000492512 MMP14P50281 582 aa17.69■□□□□ 0.42
GPNMB-213ENST00000492512 CCT4P50991 539 aaKnown RBP17.69■□□□□ 0.42
GPNMB-213ENST00000492512 APOBEC3FQ8IUX4 373 aaKnown RBP17.69■□□□□ 0.42
GPNMB-213ENST00000492512 COA1Q9GZY4 146 aa17.69■□□□□ 0.42
GPNMB-213ENST00000492512 R3HDMLQ9H3Y0 253 aa17.69■□□□□ 0.42
GPNMB-213ENST00000492512 ADAMTS8Q9UP79 889 aa17.69■□□□□ 0.42
GPNMB-213ENST00000492512 ALDH1A1P00352 501 aa17.68■□□□□ 0.42
GPNMB-213ENST00000492512 ZNF853P0CG23 659 aa17.68■□□□□ 0.42
GPNMB-213ENST00000492512 TTLL11Q8NHH1 800 aa17.68■□□□□ 0.42
GPNMB-213ENST00000492512 MKI67P46013 3256 aaKnown RBP17.67■□□□□ 0.42
GPNMB-213ENST00000492512 KIAA0100Q14667 2235 aaKnown RBP17.67■□□□□ 0.42
GPNMB-213ENST00000492512 HTTP42858 3142 aa17.67■□□□□ 0.42
GPNMB-213ENST00000492512 GNAI1P63096 354 aa17.67■□□□□ 0.42
GPNMB-213ENST00000492512 SPRYD7Q5W111 196 aa17.67■□□□□ 0.42
GPNMB-213ENST00000492512 TTLL5Q6EMB2 1281 aa17.67■□□□□ 0.42
GPNMB-213ENST00000492512 GREM2Q9H772 168 aa17.67■□□□□ 0.42
GPNMB-213ENST00000492512 IFT57Q9NWB7 429 aa17.67■□□□□ 0.42
GPNMB-213ENST00000492512 ANGEL1Q9UNK9 670 aaKnown RBP17.67■□□□□ 0.42
GPNMB-213ENST00000492512 MAP3K2Q9Y2U5 619 aa17.67■□□□□ 0.42
GPNMB-213ENST00000492512 LDLRAD1Q5T700 205 aa17.66■□□□□ 0.42
GPNMB-213ENST00000492512 KIAA0825Q8IV33 1275 aa17.66■□□□□ 0.42
GPNMB-213ENST00000492512 CHMP4AQ9BY43 222 aa17.66■□□□□ 0.42
GPNMB-213ENST00000492512 LEMD3Q9Y2U8 911 aa17.66■□□□□ 0.42
GPNMB-213ENST00000492512 CENPFP49454 3210 aa17.66■□□□□ 0.42
GPNMB-213ENST00000492512 MANSC4A6NHS7 340 aaPredicted RBP17.65■□□□□ 0.42
GPNMB-213ENST00000492512 INHBEP58166 350 aa17.65■□□□□ 0.42
GPNMB-213ENST00000492512 CALD1Q05682 793 aaKnown RBP17.65■□□□□ 0.42
GPNMB-213ENST00000492512 CCDC30Q5VVM6 783 aa17.65■□□□□ 0.42
GPNMB-213ENST00000492512 TXNRD3Q86VQ6 643 aa17.65■□□□□ 0.42
GPNMB-213ENST00000492512 SLC10A4Q96EP9 437 aa17.65■□□□□ 0.42
GPNMB-213ENST00000492512 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.65■□□□□ 0.42
GPNMB-213ENST00000492512 TRIM17Q9Y577 477 aa17.65■□□□□ 0.42
GPNMB-213ENST00000492512 IGHMBP2P38935 993 aaKnown RBP17.64■□□□□ 0.41
GPNMB-213ENST00000492512 NEXNQ0ZGT2 675 aa17.64■□□□□ 0.41
GPNMB-213ENST00000492512 C8orf58Q8NAV2 365 aa17.64■□□□□ 0.41
GPNMB-213ENST00000492512 FZD1Q9UP38 647 aa17.64■□□□□ 0.41
GPNMB-213ENST00000492512 COL1A1P02452 1464 aaPredicted RBP17.63■□□□□ 0.41
GPNMB-213ENST00000492512 PI4KAP2A4QPH2 592 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 IGKV5-2P06315 115 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 GTF2IP78347 998 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 INTS3Q68E01 1043 aaKnown RBP17.63■□□□□ 0.41
GPNMB-213ENST00000492512 KSR2Q6VAB6 950 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 OTOP1Q7RTM1 612 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 IFNL1Q8IU54 200 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 PI4KAP1Q8N8J0 262 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 DEFB129Q9H1M3 183 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 ZNF804BA4D1E1 1349 aa17.63■□□□□ 0.41
GPNMB-213ENST00000492512 PPP1R12BO60237 982 aaPredicted RBP17.62■□□□□ 0.41
GPNMB-213ENST00000492512 ZBTB48P10074 688 aaPredicted RBP17.62■□□□□ 0.41
GPNMB-213ENST00000492512 DLGAP5Q15398 846 aa17.62■□□□□ 0.41
GPNMB-213ENST00000492512 ZBED3Q96IU2 234 aaPredicted RBP17.62■□□□□ 0.41
GPNMB-213ENST00000492512 ANKRD2Q9GZV1 360 aa17.62■□□□□ 0.41
GPNMB-213ENST00000492512 ECM29Q5VYK3 1845 aa17.62■□□□□ 0.41
GPNMB-213ENST00000492512 POTEFA5A3E0 1075 aa17.61■□□□□ 0.41
GPNMB-213ENST00000492512 APAF1O14727 1248 aa17.61■□□□□ 0.41
GPNMB-213ENST00000492512 KLRK1P26718 216 aa17.61■□□□□ 0.41
GPNMB-213ENST00000492512 KCNJ4P48050 445 aa17.61■□□□□ 0.41
GPNMB-213ENST00000492512 CWF19L2Q2TBE0 894 aaKnown RBP17.61■□□□□ 0.41
GPNMB-213ENST00000492512 HABP4Q5JVS0 413 aaKnown RBP17.61■□□□□ 0.41
GPNMB-213ENST00000492512 UBE3BQ7Z3V4 1068 aa17.61■□□□□ 0.41
GPNMB-213ENST00000492512 MPHOSPH8Q99549 860 aa17.61■□□□□ 0.41
GPNMB-213ENST00000492512 LAMB1P07942 1786 aa17.61■□□□□ 0.41
GPNMB-213ENST00000492512 NEURL1BA8MQ27 555 aa17.6■□□□□ 0.41
GPNMB-213ENST00000492512 MAP3K11Q16584 847 aa17.6■□□□□ 0.41
GPNMB-213ENST00000492512 ERO1AQ96HE7 468 aa17.6■□□□□ 0.41
GPNMB-213ENST00000492512 WNK4Q96J92 1243 aa17.6■□□□□ 0.41
GPNMB-213ENST00000492512 CLMNQ96JQ2 1002 aa17.6■□□□□ 0.41
GPNMB-213ENST00000492512 RBBP6Q7Z6E9 1792 aaKnown RBP17.6■□□□□ 0.41
GPNMB-213ENST00000492512 IGF2BP3O00425 579 aaKnown RBP eCLIP17.59■□□□□ 0.41
GPNMB-213ENST00000492512 ITGA6P23229 1130 aa17.59■□□□□ 0.41
GPNMB-213ENST00000492512 DDX10Q13206 875 aaKnown RBP17.59■□□□□ 0.41
GPNMB-213ENST00000492512 STK31Q9BXU1 1019 aa17.59■□□□□ 0.41
GPNMB-213ENST00000492512 PPP2R3BQ9Y5P8 575 aa17.59■□□□□ 0.41
GPNMB-213ENST00000492512 H7C1W4 665 aa17.58■□□□□ 0.4
GPNMB-213ENST00000492512 SUPT20HL1Q3ZLR7 823 aa17.58■□□□□ 0.4
GPNMB-213ENST00000492512 OTUD7BQ6GQQ9 843 aa17.58■□□□□ 0.4
GPNMB-213ENST00000492512 TSPYL6Q8N831 410 aa17.58■□□□□ 0.4
GPNMB-213ENST00000492512 MTMR14Q8NCE2 650 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms