RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 RUNDC1Q96C34 613 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 CCDC191Q8NCU4 936 aa16.96■□□□□ 0.31
HDAC3-213ENST00000492506 CCDC85AQ96PX6 553 aaPredicted RBP16.96■□□□□ 0.31
HDAC3-213ENST00000492506 MBIPQ9NS73 344 aa16.96■□□□□ 0.31
HDAC3-213ENST00000492506 HDAC9Q9UKV0 1011 aa16.96■□□□□ 0.31
HDAC3-213ENST00000492506 GPR25O00155 361 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 ZNF853P0CG23 659 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 HSP90B1P14625 803 aaKnown RBP16.95■□□□□ 0.3
HDAC3-213ENST00000492506 ATP2B4P23634 1241 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 GOLGA2Q08379 1002 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 DACT2Q5SW24 774 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 MYD88Q99836 296 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 MXD3Q9BW11 206 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 CFHR5Q9BXR6 569 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 BRCA2P51587 3418 aa16.95■□□□□ 0.3
HDAC3-213ENST00000492506 MED23Q9ULK4 1368 aa16.94■□□□□ 0.3
HDAC3-213ENST00000492506 WNT10BO00744 389 aa16.94■□□□□ 0.3
HDAC3-213ENST00000492506 FBXO46Q6PJ61 603 aaPredicted RBP16.94■□□□□ 0.3
HDAC3-213ENST00000492506 ANKRD18AQ8IVF6 992 aa16.94■□□□□ 0.3
HDAC3-213ENST00000492506 R3HDMLQ9H3Y0 253 aa16.94■□□□□ 0.3
HDAC3-213ENST00000492506 CWC25Q9NXE8 425 aaPredicted RBP16.93■□□□□ 0.3
HDAC3-213ENST00000492506 ECM29Q5VYK3 1845 aa16.93■□□□□ 0.3
HDAC3-213ENST00000492506 RBBP6Q7Z6E9 1792 aaKnown RBP16.92■□□□□ 0.3
HDAC3-213ENST00000492506 MKRN3Q13064 507 aaKnown RBP16.92■□□□□ 0.3
HDAC3-213ENST00000492506 MINPP1Q9UNW1 487 aa16.92■□□□□ 0.3
HDAC3-213ENST00000492506 PTPN12Q05209 780 aaKnown RBP16.91■□□□□ 0.3
HDAC3-213ENST00000492506 METTL22Q9BUU2 404 aaPredicted RBP16.91■□□□□ 0.3
HDAC3-213ENST00000492506 ADAMTS8Q9UP79 889 aa16.91■□□□□ 0.3
HDAC3-213ENST00000492506 MYBBP1AQ9BQG0 1328 aaKnown RBP16.91■□□□□ 0.3
HDAC3-213ENST00000492506 NEFLP07196 543 aa16.9■□□□□ 0.3
HDAC3-213ENST00000492506 CTSWP56202 376 aa16.9■□□□□ 0.3
HDAC3-213ENST00000492506 TTLL12Q14166 644 aaPredicted RBP16.9■□□□□ 0.3
HDAC3-213ENST00000492506 LDLRAD1Q5T700 205 aa16.9■□□□□ 0.3
HDAC3-213ENST00000492506 STRIP1Q5VSL9 837 aa16.9■□□□□ 0.3
HDAC3-213ENST00000492506 TXNRD3Q86VQ6 643 aa16.9■□□□□ 0.3
HDAC3-213ENST00000492506 TTLL11Q8NHH1 800 aa16.9■□□□□ 0.3
HDAC3-213ENST00000492506 BSDC1Q9NW68 430 aaPredicted RBP16.9■□□□□ 0.3
HDAC3-213ENST00000492506 ELL2O00472 640 aaPredicted RBP16.89■□□□□ 0.29
HDAC3-213ENST00000492506 FKTNO75072 461 aa16.89■□□□□ 0.29
HDAC3-213ENST00000492506 SASH1O94885 1247 aa16.89■□□□□ 0.29
HDAC3-213ENST00000492506 CCT4P50991 539 aaKnown RBP16.89■□□□□ 0.29
HDAC3-213ENST00000492506 SREBF2Q12772 1141 aa16.89■□□□□ 0.29
HDAC3-213ENST00000492506 OGFOD1Q8N543 542 aa16.89■□□□□ 0.29
HDAC3-213ENST00000492506 ZBED3Q96IU2 234 aaPredicted RBP16.89■□□□□ 0.29
HDAC3-213ENST00000492506 CDC5LQ99459 802 aaKnown RBP16.89■□□□□ 0.29
HDAC3-213ENST00000492506 GREM2Q9H772 168 aa16.89■□□□□ 0.29
HDAC3-213ENST00000492506 RBM19Q9Y4C8 960 aaKnown RBP16.89■□□□□ 0.29
HDAC3-213ENST00000492506 MYO3BQ8WXR4 1341 aa16.89■□□□□ 0.29
HDAC3-213ENST00000492506 KIAA0100Q14667 2235 aaKnown RBP16.88■□□□□ 0.29
HDAC3-213ENST00000492506 A0A1B0GUL6 1792 aa16.88■□□□□ 0.29
HDAC3-213ENST00000492506 IGKV5-2P06315 115 aa16.88■□□□□ 0.29
HDAC3-213ENST00000492506 NF2P35240 595 aa16.88■□□□□ 0.29
HDAC3-213ENST00000492506 SPRYD7Q5W111 196 aa16.88■□□□□ 0.29
HDAC3-213ENST00000492506 C8orf58Q8NAV2 365 aa16.88■□□□□ 0.29
HDAC3-213ENST00000492506 COA1Q9GZY4 146 aa16.88■□□□□ 0.29
HDAC3-213ENST00000492506 MMP14P50281 582 aa16.87■□□□□ 0.29
HDAC3-213ENST00000492506 PRKG1Q13976 671 aa16.87■□□□□ 0.29
HDAC3-213ENST00000492506 ARMC9Q7Z3E5 817 aa16.87■□□□□ 0.29
HDAC3-213ENST00000492506 IFT57Q9NWB7 429 aa16.87■□□□□ 0.29
HDAC3-213ENST00000492506 MAP3K2Q9Y2U5 619 aa16.87■□□□□ 0.29
HDAC3-213ENST00000492506 SSC5DA1L4H1 1573 aa16.86■□□□□ 0.29
HDAC3-213ENST00000492506 KLRK1P26718 216 aa16.86■□□□□ 0.29
HDAC3-213ENST00000492506 WDR43Q15061 677 aaKnown RBP eCLIP16.86■□□□□ 0.29
HDAC3-213ENST00000492506 APOBEC3FQ8IUX4 373 aaKnown RBP16.86■□□□□ 0.29
HDAC3-213ENST00000492506 FZD1Q9UP38 647 aa16.86■□□□□ 0.29
HDAC3-213ENST00000492506 GNAI1P63096 354 aa16.85■□□□□ 0.29
HDAC3-213ENST00000492506 TTLL5Q6EMB2 1281 aa16.85■□□□□ 0.29
HDAC3-213ENST00000492506 KIAA0825Q8IV33 1275 aa16.85■□□□□ 0.29
HDAC3-213ENST00000492506 FBXW7Q969H0 707 aa16.85■□□□□ 0.29
HDAC3-213ENST00000492506 ANGEL1Q9UNK9 670 aaKnown RBP16.85■□□□□ 0.29
HDAC3-213ENST00000492506 LEMD3Q9Y2U8 911 aa16.85■□□□□ 0.29
HDAC3-213ENST00000492506 COL1A1P02452 1464 aaPredicted RBP16.85■□□□□ 0.29
HDAC3-213ENST00000492506 DDX58O95786 925 aaKnown RBP16.84■□□□□ 0.29
HDAC3-213ENST00000492506 ALDH1A1P00352 501 aa16.84■□□□□ 0.29
HDAC3-213ENST00000492506 MAP3K11Q16584 847 aa16.84■□□□□ 0.29
HDAC3-213ENST00000492506 KSR2Q6VAB6 950 aa16.84■□□□□ 0.29
HDAC3-213ENST00000492506 ZNF804BA4D1E1 1349 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 PI4KAP2A4QPH2 592 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 POTEFA5A3E0 1075 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 IGF2BP3O00425 579 aaKnown RBP eCLIP16.83■□□□□ 0.28
HDAC3-213ENST00000492506 CCDC30Q5VVM6 783 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 OTOP1Q7RTM1 612 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 IFNL1Q8IU54 200 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 PI4KAP1Q8N8J0 262 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 GCC1Q96CN9 775 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 DEFB129Q9H1M3 183 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 OTOFQ9HC10 1997 aa16.83■□□□□ 0.28
HDAC3-213ENST00000492506 IRS2Q9Y4H2 1338 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 MANSC4A6NHS7 340 aaPredicted RBP16.82■□□□□ 0.28
HDAC3-213ENST00000492506 NEURL1BA8MQ27 555 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 H7C1W4 665 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 INHBEP58166 350 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 GTF2IP78347 998 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 CWF19L2Q2TBE0 894 aaKnown RBP16.82■□□□□ 0.28
HDAC3-213ENST00000492506 TSPYL6Q8N831 410 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 CLMNQ96JQ2 1002 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 TRIM17Q9Y577 477 aa16.82■□□□□ 0.28
HDAC3-213ENST00000492506 APAF1O14727 1248 aa16.81■□□□□ 0.28
HDAC3-213ENST00000492506 ZBTB48P10074 688 aaPredicted RBP16.81■□□□□ 0.28
HDAC3-213ENST00000492506 HABP4Q5JVS0 413 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms