RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 CAP1Q01518 475 aa15.29■□□□□ 0.04
HDAC6-233ENST00000489352 DCTN1Q14203 1278 aa15.29■□□□□ 0.04
HDAC6-233ENST00000489352 TAF1CQ15572 869 aaPredicted RBP15.29■□□□□ 0.04
HDAC6-233ENST00000489352 SHISA4Q96DD7 197 aa15.29■□□□□ 0.04
HDAC6-233ENST00000489352 CLMNQ96JQ2 1002 aa15.29■□□□□ 0.04
HDAC6-233ENST00000489352 GMLQ99445 158 aa15.29■□□□□ 0.04
HDAC6-233ENST00000489352 GGA1Q9UJY5 639 aa15.29■□□□□ 0.04
HDAC6-233ENST00000489352 FZD1Q9UP38 647 aa15.29■□□□□ 0.04
HDAC6-233ENST00000489352 NLRP10Q86W26 655 aa15.28■□□□□ 0.04
HDAC6-233ENST00000489352 PNISRQ8TF01 805 aaKnown RBP15.28■□□□□ 0.04
HDAC6-233ENST00000489352 FBXW7Q969H0 707 aa15.28■□□□□ 0.04
HDAC6-233ENST00000489352 UNCXA6NJT0 531 aa15.27■□□□□ 0.04
HDAC6-233ENST00000489352 GNRH1P01148 92 aa15.27■□□□□ 0.04
HDAC6-233ENST00000489352 GJA8P48165 433 aa15.27■□□□□ 0.04
HDAC6-233ENST00000489352 PRMT2P55345 433 aa15.27■□□□□ 0.04
HDAC6-233ENST00000489352 MTFR1Q15390 333 aa15.27■□□□□ 0.04
HDAC6-233ENST00000489352 BIN2Q9UBW5 565 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-233ENST00000489352 HTATSF1O43719 755 aaKnown RBP15.26■□□□□ 0.03
HDAC6-233ENST00000489352 SASH1O94885 1247 aa15.26■□□□□ 0.03
HDAC6-233ENST00000489352 FARP2O94887 1054 aaPredicted RBP15.26■□□□□ 0.03
HDAC6-233ENST00000489352 IREB2P48200 963 aaKnown RBP15.26■□□□□ 0.03
HDAC6-233ENST00000489352 RPS8P62241 208 aaKnown RBP15.26■□□□□ 0.03
HDAC6-233ENST00000489352 PODNQ7Z5L7 613 aa15.26■□□□□ 0.03
HDAC6-233ENST00000489352 PTPN18Q99952 460 aa15.26■□□□□ 0.03
HDAC6-233ENST00000489352 RNF208Q9H0X6 261 aa15.26■□□□□ 0.03
HDAC6-233ENST00000489352 ERBB4Q15303 1308 aa15.25■□□□□ 0.03
HDAC6-233ENST00000489352 GJB1P08034 283 aa15.25■□□□□ 0.03
HDAC6-233ENST00000489352 MMP14P50281 582 aa15.25■□□□□ 0.03
HDAC6-233ENST00000489352 MAP3K11Q16584 847 aa15.25■□□□□ 0.03
HDAC6-233ENST00000489352 SUPT20HL1Q3ZLR7 823 aa15.25■□□□□ 0.03
HDAC6-233ENST00000489352 THUMPD2Q9BTF0 503 aaKnown RBP15.25■□□□□ 0.03
HDAC6-233ENST00000489352 PODXL2Q9NZ53 605 aa15.25■□□□□ 0.03
HDAC6-233ENST00000489352 MYO3BQ8WXR4 1341 aa15.24■□□□□ 0.03
HDAC6-233ENST00000489352 TESPA1A2RU30 521 aaPredicted RBP15.24■□□□□ 0.03
HDAC6-233ENST00000489352 CCL5P13501 91 aa15.24■□□□□ 0.03
HDAC6-233ENST00000489352 AMER1Q5JTC6 1135 aaPredicted RBP15.24■□□□□ 0.03
HDAC6-233ENST00000489352 RAET1EQ8TD07 263 aa15.24■□□□□ 0.03
HDAC6-233ENST00000489352 DEFB129Q9H1M3 183 aa15.24■□□□□ 0.03
HDAC6-233ENST00000489352 COL1A1P02452 1464 aaPredicted RBP15.23■□□□□ 0.03
HDAC6-233ENST00000489352 BMP8BP34820 402 aa15.23■□□□□ 0.03
HDAC6-233ENST00000489352 UBXN2AP68543 259 aa15.23■□□□□ 0.03
HDAC6-233ENST00000489352 AIMP1Q12904 312 aaKnown RBP15.23■□□□□ 0.03
HDAC6-233ENST00000489352 SF3B3Q15393 1217 aaKnown RBP15.23■□□□□ 0.03
HDAC6-233ENST00000489352 UBE2Q1Q7Z7E8 422 aa15.23■□□□□ 0.03
HDAC6-233ENST00000489352 ANKRD13AQ8IZ07 590 aa15.23■□□□□ 0.03
HDAC6-233ENST00000489352 ZNF428Q96B54 188 aa15.23■□□□□ 0.03
HDAC6-233ENST00000489352 SPTBN5Q9NRC6 3674 aaKnown RBP15.22■□□□□ 0.03
HDAC6-233ENST00000489352 ZSWIM8A7E2V4 1837 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 RPTORQ8N122 1335 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 ECM2O94769 699 aaPredicted RBP15.22■□□□□ 0.03
HDAC6-233ENST00000489352 EIF2S2P20042 333 aaKnown RBP15.22■□□□□ 0.03
HDAC6-233ENST00000489352 HOXD10P28358 340 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 GRK4P32298 578 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 BCAMP50895 628 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 EIF4A1P60842 406 aaKnown RBP15.22■□□□□ 0.03
HDAC6-233ENST00000489352 LACTBP83111 547 aaPredicted RBP15.22■□□□□ 0.03
HDAC6-233ENST00000489352 LRIT3Q3SXY7 679 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 CC2D1BQ5T0F9 858 aaKnown RBP15.22■□□□□ 0.03
HDAC6-233ENST00000489352 FAM122AQ96E09 287 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 TRIM47Q96LD4 638 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 ARHGAP39Q9C0H5 1083 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 RSPH6AQ9H0K4 717 aa15.22■□□□□ 0.03
HDAC6-233ENST00000489352 SYMPKQ92797 1274 aaKnown RBP15.21■□□□□ 0.03
HDAC6-233ENST00000489352 OPTNQ96CV9 577 aa15.21■□□□□ 0.03
HDAC6-233ENST00000489352 NUDCQ9Y266 331 aa15.21■□□□□ 0.03
HDAC6-233ENST00000489352 PPP2R3BQ9Y5P8 575 aa15.21■□□□□ 0.03
HDAC6-233ENST00000489352 CCL15-CCL14A0A0B4J2E2 113 aa15.2■□□□□ 0.02
HDAC6-233ENST00000489352 TFRCP02786 760 aaKnown RBP15.2■□□□□ 0.02
HDAC6-233ENST00000489352 GJA5P36382 358 aa15.2■□□□□ 0.02
HDAC6-233ENST00000489352 GTF2A2P52657 109 aa15.2■□□□□ 0.02
HDAC6-233ENST00000489352 CCL15Q16663 113 aa15.2■□□□□ 0.02
HDAC6-233ENST00000489352 U2AF1L4Q8WU68 220 aaKnown RBP15.2■□□□□ 0.02
HDAC6-233ENST00000489352 FAM89AQ96GI7 184 aa15.2■□□□□ 0.02
HDAC6-233ENST00000489352 MXD3Q9BW11 206 aa15.2■□□□□ 0.02
HDAC6-233ENST00000489352 MYO1BO43795 1136 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 EIF4G2P78344 907 aaKnown RBP eCLIP15.19■□□□□ 0.02
HDAC6-233ENST00000489352 CNGB1Q14028 1251 aaPredicted RBP15.19■□□□□ 0.02
HDAC6-233ENST00000489352 COPS6Q7L5N1 327 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 TDHQ8IZJ6 230 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 CFAP53Q96M91 514 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 GDF15Q99988 308 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 ELP3Q9H9T3 547 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 RIPOR2Q9Y4F9 1068 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 ECM29Q5VYK3 1845 aa15.19■□□□□ 0.02
HDAC6-233ENST00000489352 XDHP47989 1333 aa15.18■□□□□ 0.02
HDAC6-233ENST00000489352 TLR2O60603 784 aa15.18■□□□□ 0.02
HDAC6-233ENST00000489352 ATP2B4P23634 1241 aa15.18■□□□□ 0.02
HDAC6-233ENST00000489352 PLA2G5P39877 138 aa15.18■□□□□ 0.02
HDAC6-233ENST00000489352 DLGAP5Q15398 846 aa15.18■□□□□ 0.02
HDAC6-233ENST00000489352 RTL5Q5HYW3 569 aaPredicted RBP15.18■□□□□ 0.02
HDAC6-233ENST00000489352 DACT2Q5SW24 774 aa15.18■□□□□ 0.02
HDAC6-233ENST00000489352 STRIP1Q5VSL9 837 aa15.18■□□□□ 0.02
HDAC6-233ENST00000489352 HELBQ8NG08 1087 aaPredicted RBP15.18■□□□□ 0.02
HDAC6-233ENST00000489352 COL3A1P02461 1466 aaPredicted RBP15.18■□□□□ 0.02
HDAC6-233ENST00000489352 IRS2Q9Y4H2 1338 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 FMNL1O95466 1100 aaPredicted RBP15.17■□□□□ 0.02
HDAC6-233ENST00000489352 SGPL1O95470 568 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 ANXA1P04083 346 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 NEFMP07197 916 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 U2AF1L5P0DN76 240 aaPredicted RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms