RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 ESYT1Q9BSJ8 1104 aa13.95□□□□□ -0.18
C9orf3-220ENST00000489318 UPF2Q9HAU5 1272 aaKnown RBP13.95□□□□□ -0.18
C9orf3-220ENST00000489318 PAG1Q9NWQ8 432 aa13.95□□□□□ -0.18
C9orf3-220ENST00000489318 MED23Q9ULK4 1368 aa13.95□□□□□ -0.18
C9orf3-220ENST00000489318 COL1A1P02452 1464 aaPredicted RBP13.94□□□□□ -0.18
C9orf3-220ENST00000489318 MCAMP43121 646 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 PHKA1P46020 1223 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 RBM25P49756 843 aaKnown RBP13.94□□□□□ -0.18
C9orf3-220ENST00000489318 MFAP1P55081 439 aaKnown RBP13.94□□□□□ -0.18
C9orf3-220ENST00000489318 SCARF1Q14162 830 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 GORABQ5T7V8 394 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 STYK1Q6J9G0 422 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 C15orf52Q6ZUT6 534 aaKnown RBP13.94□□□□□ -0.18
C9orf3-220ENST00000489318 SNED1Q8TER0 1413 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 MASTLQ96GX5 879 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 PODXL2Q9NZ53 605 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 SLX4Q8IY92 1834 aa13.94□□□□□ -0.18
C9orf3-220ENST00000489318 PDS5AQ29RF7 1337 aaKnown RBP13.93□□□□□ -0.18
C9orf3-220ENST00000489318 SNAP23O00161 211 aa13.93□□□□□ -0.18
C9orf3-220ENST00000489318 SGSM2O43147 1006 aa13.93□□□□□ -0.18
C9orf3-220ENST00000489318 REC8O95072 547 aa13.93□□□□□ -0.18
C9orf3-220ENST00000489318 ALDH1B1P30837 517 aa13.93□□□□□ -0.18
C9orf3-220ENST00000489318 DNAJC2Q99543 621 aaKnown RBP13.93□□□□□ -0.18
C9orf3-220ENST00000489318 FSD1Q9BTV5 496 aa13.93□□□□□ -0.18
C9orf3-220ENST00000489318 MTFR1LQ9H019 292 aa13.93□□□□□ -0.18
C9orf3-220ENST00000489318 LEMD3Q9Y2U8 911 aa13.93□□□□□ -0.18
C9orf3-220ENST00000489318 PPEF1O14829 653 aaPredicted RBP13.92□□□□□ -0.18
C9orf3-220ENST00000489318 SP8Q8IXZ3 490 aa13.92□□□□□ -0.18
C9orf3-220ENST00000489318 EDC3Q96F86 508 aaKnown RBP13.92□□□□□ -0.18
C9orf3-220ENST00000489318 IL25Q9H293 177 aa13.92□□□□□ -0.18
C9orf3-220ENST00000489318 DIAPH3Q9NSV4 1193 aa13.92□□□□□ -0.18
C9orf3-220ENST00000489318 ATP6V0A2Q9Y487 856 aa13.92□□□□□ -0.18
C9orf3-220ENST00000489318 ZNF646O15015 1829 aaPredicted RBP13.92□□□□□ -0.18
C9orf3-220ENST00000489318 GOLIM4O00461 696 aa13.91□□□□□ -0.18
C9orf3-220ENST00000489318 SEMA3EO15041 775 aa13.91□□□□□ -0.18
C9orf3-220ENST00000489318 RASGRF1Q13972 1273 aa13.91□□□□□ -0.18
C9orf3-220ENST00000489318 RUFY2Q8WXA3 655 aa13.91□□□□□ -0.18
C9orf3-220ENST00000489318 C22orf23Q9BZE7 217 aa13.91□□□□□ -0.18
C9orf3-220ENST00000489318 HMG20BQ9P0W2 317 aa13.91□□□□□ -0.18
C9orf3-220ENST00000489318 NDUFB9Q9Y6M9 179 aa13.91□□□□□ -0.18
C9orf3-220ENST00000489318 ZAP70P43403 619 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 GPSM2P81274 684 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 TTF1Q15361 905 aaPredicted RBP13.9□□□□□ -0.18
C9orf3-220ENST00000489318 PI16Q6UXB8 463 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 FBXO33Q7Z6M2 555 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 SLC51AQ86UW1 340 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 C2CD5Q86YS7 1000 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 SPATA5Q8NB90 893 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 FAM84BQ96KN1 310 aaPredicted RBP13.9□□□□□ -0.18
C9orf3-220ENST00000489318 SGIP1Q9BQI5 828 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 USP26Q9BXU7 913 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 ANTXR1Q9H6X2 564 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 CCDC88AQ3V6T2 1871 aa13.9□□□□□ -0.18
C9orf3-220ENST00000489318 A0A0D9SFI3 127 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 WTIPA6NIX2 430 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-220ENST00000489318 H0YIN7 160 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 CYP2E1P05181 493 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-220ENST00000489318 ATP2B4P23634 1241 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 KLRK1P26718 216 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 KCNJ4P48050 445 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 BCAMP50895 628 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 NMIQ13287 307 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-220ENST00000489318 CAVIN4Q5BKX8 364 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 IL17RAQ96F46 866 aa13.89□□□□□ -0.19
C9orf3-220ENST00000489318 GNL3LQ9NVN8 582 aaKnown RBP13.89□□□□□ -0.19
C9orf3-220ENST00000489318 ZFYP08048 801 aaPredicted RBP13.88□□□□□ -0.19
C9orf3-220ENST00000489318 GYG1P46976 350 aa13.88□□□□□ -0.19
C9orf3-220ENST00000489318 FKBP4Q02790 459 aaKnown RBP eCLIP13.88□□□□□ -0.19
C9orf3-220ENST00000489318 LRRFIP1Q32MZ4 808 aaKnown RBP13.88□□□□□ -0.19
C9orf3-220ENST00000489318 CWC27Q6UX04 472 aaKnown RBP13.88□□□□□ -0.19
C9orf3-220ENST00000489318 CNKSR1Q969H4 720 aa13.88□□□□□ -0.19
C9orf3-220ENST00000489318 FAM227BQ96M60 508 aa13.88□□□□□ -0.19
C9orf3-220ENST00000489318 LSG1Q9H089 658 aaKnown RBP13.88□□□□□ -0.19
C9orf3-220ENST00000489318 ANKIB1Q9P2G1 1089 aa13.88□□□□□ -0.19
C9orf3-220ENST00000489318 PSME4Q14997 1843 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 RNF113AO15541 343 aaKnown RBP13.87□□□□□ -0.19
C9orf3-220ENST00000489318 IGSF3O75054 1194 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 ANP32AP39687 249 aaKnown RBP13.87□□□□□ -0.19
C9orf3-220ENST00000489318 R3HDM1Q15032 1099 aaKnown RBP13.87□□□□□ -0.19
C9orf3-220ENST00000489318 ZMYM1Q5SVZ6 1142 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 PRPF40BQ6NWY9 871 aaKnown RBP13.87□□□□□ -0.19
C9orf3-220ENST00000489318 TBC1D16Q8TBP0 767 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 HELLSQ9NRZ9 838 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 GGA1Q9UJY5 639 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 DENND2AQ9ULE3 1009 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 LAMA4Q16363 1823 aa13.87□□□□□ -0.19
C9orf3-220ENST00000489318 UFL1O94874 794 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 ZBTB7AO95365 584 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 POLD1P28340 1107 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 CHRNA5P30532 468 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 HIBADHP31937 336 aaKnown RBP13.86□□□□□ -0.19
C9orf3-220ENST00000489318 TXNRD3Q86VQ6 643 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 C7orf43Q8WVR3 580 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 KIF2CQ99661 725 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.86□□□□□ -0.19
C9orf3-220ENST00000489318 ANO2Q9NQ90 1003 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 PIH1D3Q9NQM4 214 aaKnown RBP13.86□□□□□ -0.19
C9orf3-220ENST00000489318 NSFL1CQ9UNZ2 370 aaKnown RBP13.86□□□□□ -0.19
C9orf3-220ENST00000489318 CCDC171Q6TFL3 1326 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 SALL1Q9NSC2 1324 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms