RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	ATP2B3	Q16720	1220 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	CCDC152	Q4G0S7	254 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	ZSCAN25	Q6NSZ9	544 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	RUFY3	Q7L099	469 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	RASEF	Q8IZ41	740 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	SYT17	Q9BSW7	474 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	GREM2	Q9H772	168 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	PDRG1	Q9NUG6	133 aa		12.98	□□□□□ -0.33
ITSN1-231	ENST00000489261	SLC27A2	O14975	620 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	RPS6KA4	O75676	772 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	PDE8B	O95263	885 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	POLD1	P28340	1107 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	TTF1	Q15361	905 aa	Predicted RBP	12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	ZMYM1	Q5SVZ6	1142 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	DSCC1	Q9BVC3	393 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	FOXD4L1	Q9NU39	408 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	KIF13B	Q9NQT8	1826 aa		12.97	□□□□□ -0.33
ITSN1-231	ENST00000489261	GOLIM4	O00461	696 aa		12.96	□□□□□ -0.33
ITSN1-231	ENST00000489261	CAST	P20810	708 aa	Known RBP	12.96	□□□□□ -0.33
ITSN1-231	ENST00000489261	SLC10A5	Q5PT55	438 aa		12.96	□□□□□ -0.33
ITSN1-231	ENST00000489261	LPIN2	Q92539	896 aa		12.96	□□□□□ -0.33
ITSN1-231	ENST00000489261	JAKMIP1	Q96N16	626 aa	Known RBP	12.96	□□□□□ -0.33
ITSN1-231	ENST00000489261	UPF3B	Q9BZI7	483 aa	Known RBP	12.96	□□□□□ -0.33
ITSN1-231	ENST00000489261	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	GNPAT	O15228	680 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	TRAK2	O60296	914 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	NTSR2	O95665	410 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	HMGB1	P09429	215 aa	Known RBP	12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	IGHMBP2	P38935	993 aa	Known RBP	12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	PUM3	Q15397	648 aa	Known RBP	12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	BLOC1S2	Q6QNY1	142 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	DDX46	Q7L014	1031 aa	Known RBP	12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	SYNE4	Q8N205	404 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	VGLL2	Q8N8G2	317 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	CHMP4C	Q96CF2	233 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	CDC5L	Q99459	802 aa	Known RBP	12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	MPHOSPH8	Q99549	860 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	NYX	Q9GZU5	481 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	NARF	Q9UHQ1	456 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	CTNNA3	Q9UI47	895 aa		12.95	□□□□□ -0.34
ITSN1-231	ENST00000489261	PHF14	O94880	888 aa		12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	SLC5A1	P13866	664 aa		12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	FGFR2	P21802	821 aa		12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	AK2	P54819	239 aa		12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	SF3B3	Q15393	1217 aa	Known RBP	12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	SMIM5	Q71RC9	77 aa		12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	EDC3	Q96F86	508 aa	Known RBP	12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	RPAP1	Q9BWH6	1393 aa	Predicted RBP	12.94	□□□□□ -0.34
ITSN1-231	ENST00000489261	BAG4	O95429	457 aa	Known RBP	12.93	□□□□□ -0.34
ITSN1-231	ENST00000489261	MSL1	Q68DK7	614 aa		12.93	□□□□□ -0.34
ITSN1-231	ENST00000489261	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.93	□□□□□ -0.34
ITSN1-231	ENST00000489261	ZGPAT	Q8N5A5	531 aa	Known RBP	12.93	□□□□□ -0.34
ITSN1-231	ENST00000489261	KIAA1551	Q9HCM1	1747 aa		12.93	□□□□□ -0.34
ITSN1-231	ENST00000489261	MYH3	P11055	1940 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	BRD1	O95696	1058 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	HCLS1	P14317	486 aa	Predicted RBP	12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	ADRA2B	P18089	450 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	RPS6KB1	P23443	525 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	ARID4A	P29374	1257 aa	Predicted RBP	12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	ADORA1	P30542	326 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	FKBP4	Q02790	459 aa	Known RBP eCLIP	12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	ADCK5	Q3MIX3	580 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	RIC1	Q4ADV7	1423 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	APPBP2	Q92624	585 aa		12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	ISY1	Q9ULR0	285 aa	Known RBP	12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	RTCB	Q9Y3I0	505 aa	Known RBP	12.92	□□□□□ -0.34
ITSN1-231	ENST00000489261	WDR33	Q9C0J8	1336 aa	Known RBP	12.91	□□□□□ -0.34
ITSN1-231	ENST00000489261	ZPR1	O75312	459 aa		12.91	□□□□□ -0.34
ITSN1-231	ENST00000489261	NEK1	Q96PY6	1258 aa		12.91	□□□□□ -0.34
ITSN1-231	ENST00000489261	SMC3	Q9UQE7	1217 aa		12.91	□□□□□ -0.34
ITSN1-231	ENST00000489261	GTF2E1	P29083	439 aa	Predicted RBP	12.9	□□□□□ -0.34
ITSN1-231	ENST00000489261	ZAP70	P43403	619 aa		12.9	□□□□□ -0.34
ITSN1-231	ENST00000489261	UBE3C	Q15386	1083 aa		12.9	□□□□□ -0.34
ITSN1-231	ENST00000489261	CCDC102B	Q68D86	513 aa		12.9	□□□□□ -0.34
ITSN1-231	ENST00000489261	TPTE2	Q6XPS3	522 aa		12.9	□□□□□ -0.34
ITSN1-231	ENST00000489261	SETDB2	Q96T68	719 aa		12.9	□□□□□ -0.34
ITSN1-231	ENST00000489261	BRCA1	P38398	1863 aa	Known RBP	12.9	□□□□□ -0.34
ITSN1-231	ENST00000489261	DCAF8L1	A6NGE4	600 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	ZBTB22	O15209	634 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	HSPD1	P10809	573 aa	Known RBP	12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	TRAPPC3L	Q5T215	181 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	L1TD1	Q5T7N2	865 aa	Known RBP	12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	ANKRD18A	Q8IVF6	992 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	NLGN2	Q8NFZ4	835 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	ARHGEF1	Q92888	912 aa	Known RBP	12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	SEC62	Q99442	399 aa	Known RBP	12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	BSDC1	Q9NW68	430 aa	Predicted RBP	12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	ZDHHC9	Q9Y397	364 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	ATP6V1D	Q9Y5K8	247 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	NDUFB9	Q9Y6M9	179 aa		12.89	□□□□□ -0.35
ITSN1-231	ENST00000489261	IGSF3	O75054	1194 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	PDC	P20941	246 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	ADD2	P35612	726 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	MCAM	P43121	646 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	UBE4A	Q14139	1066 aa		12.88	□□□□□ -0.35
ITSN1-231	ENST00000489261	WASHC4	Q2M389	1173 aa		12.88	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms