RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 PDE8BO95263 885 aa19.36■□□□□ 0.69
SYNE1-227ENST00000489156 TNNI3KQ59H18 835 aa19.36■□□□□ 0.69
SYNE1-227ENST00000489156 ANKRD2Q9GZV1 360 aa19.36■□□□□ 0.69
SYNE1-227ENST00000489156 FPGT-TNNI3KV9GXZ4 949 aa19.36■□□□□ 0.69
SYNE1-227ENST00000489156 TRIM6-TRIM34B2RNG4 842 aa19.35■□□□□ 0.69
SYNE1-227ENST00000489156 C22orf23Q9BZE7 217 aa19.35■□□□□ 0.69
SYNE1-227ENST00000489156 CNTROBQ8N137 903 aa19.35■□□□□ 0.69
SYNE1-227ENST00000489156 MPNDQ8N594 471 aa19.35■□□□□ 0.69
SYNE1-227ENST00000489156 XDHP47989 1333 aa19.34■□□□□ 0.69
SYNE1-227ENST00000489156 LTBP1Q14766 1721 aa19.34■□□□□ 0.69
SYNE1-227ENST00000489156 CC2D2BQ6DHV5 1058 aa19.34■□□□□ 0.69
SYNE1-227ENST00000489156 RILPL2Q969X0 211 aa19.34■□□□□ 0.69
SYNE1-227ENST00000489156 CCDC8Q9H0W5 538 aaPredicted RBP19.34■□□□□ 0.69
SYNE1-227ENST00000489156 RBM25P49756 843 aaKnown RBP19.33■□□□□ 0.69
SYNE1-227ENST00000489156 CCDC93Q567U6 631 aa19.33■□□□□ 0.69
SYNE1-227ENST00000489156 DPP8Q6V1X1 898 aaPredicted RBP19.33■□□□□ 0.69
SYNE1-227ENST00000489156 PODXL2Q9NZ53 605 aa19.33■□□□□ 0.69
SYNE1-227ENST00000489156 FER1L6Q2WGJ9 1857 aa19.33■□□□□ 0.68
SYNE1-227ENST00000489156 TIMM10P62072 90 aa19.33■□□□□ 0.68
SYNE1-227ENST00000489156 POLLQ9UGP5 575 aa19.33■□□□□ 0.68
SYNE1-227ENST00000489156 KCNJ4P48050 445 aa19.32■□□□□ 0.68
SYNE1-227ENST00000489156 GGA1Q9UJY5 639 aa19.32■□□□□ 0.68
SYNE1-227ENST00000489156 AKAP2Q9Y2D5 859 aa19.32■□□□□ 0.68
SYNE1-227ENST00000489156 SNED1Q8TER0 1413 aa19.32■□□□□ 0.68
SYNE1-227ENST00000489156 C6orf229H3BNL8 230 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 UFL1O94874 794 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 REC8O95072 547 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 YBX3P16989 372 aaKnown RBP eCLIP19.31■□□□□ 0.68
SYNE1-227ENST00000489156 PUM3Q15397 648 aaKnown RBP19.31■□□□□ 0.68
SYNE1-227ENST00000489156 ATP2B3Q16720 1220 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 SOGA3Q5TF21 947 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 RTKN2Q8IZC4 609 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 TBC1D16Q8TBP0 767 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 GPR101Q96P66 508 aaPredicted RBP19.31■□□□□ 0.68
SYNE1-227ENST00000489156 DBNLQ9UJU6 430 aaKnown RBP19.31■□□□□ 0.68
SYNE1-227ENST00000489156 LEMD3Q9Y2U8 911 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 ZNF804BA4D1E1 1349 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 A0A1B0GUL7 405 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 ATP5JP18859 108 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 FGFR2P21802 821 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 ATP2B4P23634 1241 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 CHMLP26374 656 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 UBE4AQ14139 1066 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 EVI5LQ96CN4 794 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 NEUROD6Q96NK8 337 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 DUOX1Q9NRD9 1551 aa19.31■□□□□ 0.68
SYNE1-227ENST00000489156 TLR7Q9NYK1 1049 aaKnown RBP19.31■□□□□ 0.68
SYNE1-227ENST00000489156 KLRK1P26718 216 aa19.29■□□□□ 0.68
SYNE1-227ENST00000489156 GRIPAP1Q4V328 841 aa19.29■□□□□ 0.68
SYNE1-227ENST00000489156 LPIN2Q92539 896 aa19.29■□□□□ 0.68
SYNE1-227ENST00000489156 CCDC88AQ3V6T2 1871 aa19.29■□□□□ 0.68
SYNE1-227ENST00000489156 AK9Q5TCS8 1911 aa19.29■□□□□ 0.68
SYNE1-227ENST00000489156 ZNF609O15014 1411 aa19.29■□□□□ 0.68
SYNE1-227ENST00000489156 EPB41L2O43491 1005 aaKnown RBP19.28■□□□□ 0.68
SYNE1-227ENST00000489156 SLC5A1P13866 664 aa19.28■□□□□ 0.68
SYNE1-227ENST00000489156 GPR162Q16538 588 aa19.28■□□□□ 0.68
SYNE1-227ENST00000489156 TXNRD3Q86VQ6 643 aa19.28■□□□□ 0.68
SYNE1-227ENST00000489156 RTFDC1Q9BY42 306 aaPredicted RBP19.28■□□□□ 0.68
SYNE1-227ENST00000489156 IFIT1P09914 478 aaKnown RBP19.27■□□□□ 0.68
SYNE1-227ENST00000489156 ADORA1P30542 326 aa19.27■□□□□ 0.68
SYNE1-227ENST00000489156 ARHGAP27Q6ZUM4 889 aa19.27■□□□□ 0.68
SYNE1-227ENST00000489156 PSMD1Q99460 953 aa19.27■□□□□ 0.68
SYNE1-227ENST00000489156 DBNDD2Q9BQY9 259 aa19.27■□□□□ 0.68
SYNE1-227ENST00000489156 ESYT1Q9BSJ8 1104 aa19.27■□□□□ 0.68
SYNE1-227ENST00000489156 USP26Q9BXU7 913 aa19.27■□□□□ 0.68
SYNE1-227ENST00000489156 ARAP2Q8WZ64 1704 aa19.27■□□□□ 0.67
SYNE1-227ENST00000489156 NFKBIEO00221 500 aa19.26■□□□□ 0.67
SYNE1-227ENST00000489156 RIMBP2O15034 1052 aa19.26■□□□□ 0.67
SYNE1-227ENST00000489156 FKBP4Q02790 459 aaKnown RBP eCLIP19.26■□□□□ 0.67
SYNE1-227ENST00000489156 XAGE2Q96GT9 111 aa19.26■□□□□ 0.67
SYNE1-227ENST00000489156 HIP1O00291 1037 aa19.26■□□□□ 0.67
SYNE1-227ENST00000489156 WASHC4Q2M389 1173 aa19.26■□□□□ 0.67
SYNE1-227ENST00000489156 TICAM2Q86XR7 235 aa19.26■□□□□ 0.67
SYNE1-227ENST00000489156 TAOK3Q9H2K8 898 aa19.26■□□□□ 0.67
SYNE1-227ENST00000489156 MAP4K4O95819 1239 aaPredicted RBP19.25■□□□□ 0.67
SYNE1-227ENST00000489156 GYG1P46976 350 aa19.25■□□□□ 0.67
SYNE1-227ENST00000489156 RASSF7Q02833 373 aa19.25■□□□□ 0.67
SYNE1-227ENST00000489156 SUPT20HQ8NEM7 779 aa19.25■□□□□ 0.67
SYNE1-227ENST00000489156 BOLA2Q9H3K6 86 aa19.25■□□□□ 0.67
SYNE1-227ENST00000489156 ZNF277Q9NRM2 450 aaPredicted RBP19.25■□□□□ 0.67
SYNE1-227ENST00000489156 IRS2Q9Y4H2 1338 aa19.25■□□□□ 0.67
SYNE1-227ENST00000489156 EYA3Q99504 573 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 ZC3H12CQ9C0D7 883 aaKnown RBP19.24■□□□□ 0.67
SYNE1-227ENST00000489156 SBF1O95248 1867 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 MED23Q9ULK4 1368 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 BCAMP50895 628 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 AOC3Q16853 763 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 GORABQ5T7V8 394 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.24■□□□□ 0.67
SYNE1-227ENST00000489156 RUFY2Q8WXA3 655 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 FAM84BQ96KN1 310 aaPredicted RBP19.24■□□□□ 0.67
SYNE1-227ENST00000489156 HAUS7Q99871 368 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 CHD4Q14839 1912 aa19.24■□□□□ 0.67
SYNE1-227ENST00000489156 C15orf52Q6ZUT6 534 aaKnown RBP19.23■□□□□ 0.67
SYNE1-227ENST00000489156 PPIP5K2O43314 1243 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 CAVIN4Q5BKX8 364 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 PHKA1P46020 1223 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 PRELPP51888 382 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 KIAA2012Q0VF49 1180 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 BECN1Q14457 450 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms