RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 MYH3P11055 1940 aa28.69■■■□□ 2.18
PTPN4-211ENST00000488279 ZNF609O15014 1411 aa28.69■■■□□ 2.18
PTPN4-211ENST00000488279 LBX1P52954 281 aa28.68■■■□□ 2.18
PTPN4-211ENST00000488279 FOXO4P98177 505 aa28.68■■■□□ 2.18
PTPN4-211ENST00000488279 IFIT5Q13325 482 aaKnown RBP28.68■■■□□ 2.18
PTPN4-211ENST00000488279 SULF1Q8IWU6 871 aa28.68■■■□□ 2.18
PTPN4-211ENST00000488279 SCARF1Q14162 830 aa28.67■■■□□ 2.18
PTPN4-211ENST00000488279 GGA3Q9NZ52 723 aa28.67■■■□□ 2.18
PTPN4-211ENST00000488279 C9orf78Q9NZ63 289 aaPredicted RBP28.67■■■□□ 2.18
PTPN4-211ENST00000488279 CHMP3Q9Y3E7 222 aa28.67■■■□□ 2.18
PTPN4-211ENST00000488279 ADM5C9JUS6 153 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 GRM8O00222 908 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 AOC2O75106 756 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 KCNJ4P48050 445 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 CHRNDQ07001 517 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 SLC4A10Q6U841 1118 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 TXNRD3Q86VQ6 643 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 MYOZ2Q9NPC6 264 aa28.66■■■□□ 2.18
PTPN4-211ENST00000488279 CAPN15O75808 1086 aa28.65■■■□□ 2.18
PTPN4-211ENST00000488279 ALDH1L1O75891 902 aa28.65■■■□□ 2.18
PTPN4-211ENST00000488279 HUNKP57058 714 aa28.65■■■□□ 2.18
PTPN4-211ENST00000488279 STRIP1Q5VSL9 837 aa28.65■■■□□ 2.18
PTPN4-211ENST00000488279 C2orf69Q8N8R5 385 aa28.65■■■□□ 2.18
PTPN4-211ENST00000488279 FBXW7Q969H0 707 aa28.65■■■□□ 2.18
PTPN4-211ENST00000488279 HSPA8P11142 646 aaKnown RBP28.64■■■□□ 2.18
PTPN4-211ENST00000488279 DACT2Q5SW24 774 aa28.64■■■□□ 2.18
PTPN4-211ENST00000488279 LMBR1LQ6UX01 489 aa28.64■■■□□ 2.18
PTPN4-211ENST00000488279 GBA2Q9HCG7 927 aaPredicted RBP28.64■■■□□ 2.18
PTPN4-211ENST00000488279 ASTN2O75129 1339 aaPredicted RBP28.64■■■□□ 2.17
PTPN4-211ENST00000488279 ANGEL2Q5VTE6 544 aaKnown RBP28.63■■■□□ 2.17
PTPN4-211ENST00000488279 OGFOD1Q8N543 542 aa28.63■■■□□ 2.17
PTPN4-211ENST00000488279 SRCIN1Q9C0H9 1055 aa28.63■■■□□ 2.17
PTPN4-211ENST00000488279 CCDC57Q2TAC2 916 aa28.62■■■□□ 2.17
PTPN4-211ENST00000488279 TTLL5Q6EMB2 1281 aa28.62■■■□□ 2.17
PTPN4-211ENST00000488279 MYO3BQ8WXR4 1341 aa28.62■■■□□ 2.17
PTPN4-211ENST00000488279 E9PSI1 815 aa28.61■■■□□ 2.17
PTPN4-211ENST00000488279 KLRK1P26718 216 aa28.61■■■□□ 2.17
PTPN4-211ENST00000488279 EPHA10Q5JZY3 1008 aa28.61■■■□□ 2.17
PTPN4-211ENST00000488279 MXD3Q9BW11 206 aa28.61■■■□□ 2.17
PTPN4-211ENST00000488279 TAF5LO75529 589 aa28.6■■■□□ 2.17
PTPN4-211ENST00000488279 MMP14P50281 582 aa28.6■■■□□ 2.17
PTPN4-211ENST00000488279 TAF7LQ5H9L4 462 aa28.6■■■□□ 2.17
PTPN4-211ENST00000488279 SPEF2Q9C093 1822 aa28.59■■■□□ 2.17
PTPN4-211ENST00000488279 HELBQ8NG08 1087 aaPredicted RBP28.59■■■□□ 2.17
PTPN4-211ENST00000488279 BRPF1P55201 1214 aaPredicted RBP28.58■■■□□ 2.17
PTPN4-211ENST00000488279 NOGQ13253 232 aa28.58■■■□□ 2.17
PTPN4-211ENST00000488279 LDHAL6AQ6ZMR3 332 aa28.58■■■□□ 2.17
PTPN4-211ENST00000488279 CDCA5Q96FF9 252 aa28.58■■■□□ 2.17
PTPN4-211ENST00000488279 PITPNM2Q9BZ72 1349 aa28.58■■■□□ 2.17
PTPN4-211ENST00000488279 GTF2IP78347 998 aa28.57■■■□□ 2.16
PTPN4-211ENST00000488279 RGMBQ6NW40 437 aa28.57■■■□□ 2.16
PTPN4-211ENST00000488279 MRPL50Q8N5N7 158 aaKnown RBP28.57■■■□□ 2.16
PTPN4-211ENST00000488279 CD209Q9NNX6 404 aa28.57■■■□□ 2.16
PTPN4-211ENST00000488279 SNAP23O00161 211 aa28.56■■■□□ 2.16
PTPN4-211ENST00000488279 CA12O43570 354 aa28.56■■■□□ 2.16
PTPN4-211ENST00000488279 POLR2AP24928 1970 aaKnown RBP28.56■■■□□ 2.16
PTPN4-211ENST00000488279 NBPF9Q3BBW0 867 aa28.56■■■□□ 2.16
PTPN4-211ENST00000488279 C15orf52Q6ZUT6 534 aaKnown RBP28.56■■■□□ 2.16
PTPN4-211ENST00000488279 CCDC102AQ96A19 550 aa28.56■■■□□ 2.16
PTPN4-211ENST00000488279 ZNF594Q96JF6 807 aaPredicted RBP28.56■■■□□ 2.16
PTPN4-211ENST00000488279 THSD7BQ9C0I4 1608 aa28.56■■■□□ 2.16
PTPN4-211ENST00000488279 CNNM1Q9NRU3 951 aa28.56■■■□□ 2.16
PTPN4-211ENST00000488279 SLFN5Q08AF3 891 aa28.55■■■□□ 2.16
PTPN4-211ENST00000488279 HDAC9Q9UKV0 1011 aa28.55■■■□□ 2.16
PTPN4-211ENST00000488279 PSME4Q14997 1843 aa28.55■■■□□ 2.16
PTPN4-211ENST00000488279 ZNF157P51786 506 aaPredicted RBP28.54■■■□□ 2.16
PTPN4-211ENST00000488279 PTPRCP08575 1304 aa28.53■■■□□ 2.16
PTPN4-211ENST00000488279 WNT10BO00744 389 aa28.53■■■□□ 2.16
PTPN4-211ENST00000488279 PLIN1O60240 522 aa28.53■■■□□ 2.16
PTPN4-211ENST00000488279 NBPF7P0C2Y1 421 aaPredicted RBP28.53■■■□□ 2.16
PTPN4-211ENST00000488279 KIAA0825Q8IV33 1275 aa28.53■■■□□ 2.16
PTPN4-211ENST00000488279 SUCLG2Q96I99 432 aa28.53■■■□□ 2.16
PTPN4-211ENST00000488279 IRS2Q9Y4H2 1338 aa28.52■■■□□ 2.16
PTPN4-211ENST00000488279 ZNF804AQ7Z570 1209 aa28.52■■■□□ 2.16
PTPN4-211ENST00000488279 SSH1Q8WYL5 1049 aa28.52■■■□□ 2.16
PTPN4-211ENST00000488279 UTYO14607 1347 aa28.51■■■□□ 2.15
PTPN4-211ENST00000488279 FAM155AB1AL88 458 aaPredicted RBP28.51■■■□□ 2.15
PTPN4-211ENST00000488279 ZIC5Q96T25 663 aa28.51■■■□□ 2.15
PTPN4-211ENST00000488279 TSKSQ9UJT2 592 aa28.51■■■□□ 2.15
PTPN4-211ENST00000488279 SCAF8Q9UPN6 1271 aaKnown RBP28.51■■■□□ 2.15
PTPN4-211ENST00000488279 FKBP1BP68106 108 aa28.5■■■□□ 2.15
PTPN4-211ENST00000488279 KAZALD1Q96I82 304 aa28.5■■■□□ 2.15
PTPN4-211ENST00000488279 IL1R1P14778 569 aa28.49■■■□□ 2.15
PTPN4-211ENST00000488279 SASH1O94885 1247 aa28.48■■■□□ 2.15
PTPN4-211ENST00000488279 CDCA7LQ96GN5 454 aa28.48■■■□□ 2.15
PTPN4-211ENST00000488279 PRAMEF18Q5VWM3 479 aa28.47■■■□□ 2.15
PTPN4-211ENST00000488279 BICC1Q9H694 974 aaKnown RBP28.47■■■□□ 2.15
PTPN4-211ENST00000488279 KIF23Q02241 960 aaPredicted RBP28.46■■■□□ 2.15
PTPN4-211ENST00000488279 UBE4AQ14139 1066 aa28.46■■■□□ 2.15
PTPN4-211ENST00000488279 ALDH1L2Q3SY69 923 aa28.46■■■□□ 2.15
PTPN4-211ENST00000488279 SLC10A3P09131 477 aa28.45■■■□□ 2.14
PTPN4-211ENST00000488279 RABL6Q3YEC7 729 aaPredicted RBP28.45■■■□□ 2.14
PTPN4-211ENST00000488279 CERS5Q8N5B7 392 aa28.45■■■□□ 2.14
PTPN4-211ENST00000488279 CCER2I3L3R5 266 aa28.44■■■□□ 2.14
PTPN4-211ENST00000488279 NF2P35240 595 aa28.44■■■□□ 2.14
PTPN4-211ENST00000488279 FKBP1AP62942 108 aaKnown RBP28.44■■■□□ 2.14
PTPN4-211ENST00000488279 DLGAP5Q15398 846 aa28.44■■■□□ 2.14
PTPN4-211ENST00000488279 APOBEC3FQ8IUX4 373 aaKnown RBP28.44■■■□□ 2.14
PTPN4-211ENST00000488279 ZBED3Q96IU2 234 aaPredicted RBP28.44■■■□□ 2.14
PTPN4-211ENST00000488279 PUS3Q9BZE2 481 aaKnown RBP28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms