RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792		H7C1W4	665 aa		7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	CT47B1	P0C2W7	299 aa	Predicted RBP	7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	KLRK1	P26718	216 aa		7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	GRIPAP1	Q4V328	841 aa		7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	SMYD5	Q6GMV2	418 aa		7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	ZNF622	Q969S3	477 aa	Known RBP eCLIP	7.33	□□□□□ -1.24	6e-8	■■□□□ 12.3
CUX1-208	ENST00000485792	NLRP3	Q96P20	1036 aa		7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	PLA2G12B	Q9BX93	195 aa		7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	RTFDC1	Q9BY42	306 aa	Predicted RBP	7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	LHX6	Q9UPM6	363 aa		7.33	□□□□□ -1.24
CUX1-208	ENST00000485792	UTY	O14607	1347 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	THSD7B	Q9C0I4	1608 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	SHTN1	A0MZ66	631 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	YDJC	A8MPS7	323 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	BBOX1	O75936	387 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	DDX58	O95786	925 aa	Known RBP	7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	LMNB1	P20700	586 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	FOXO4	P98177	505 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	ALDH1L2	Q3SY69	923 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	SOGA3	Q5TF21	947 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	CC2D2B	Q6DHV5	1058 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	ARHGAP27	Q6ZUM4	889 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	RIC3	Q7Z5B4	369 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	ANKRD44	Q8N8A2	993 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	LINS1	Q8NG48	757 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	ZNF526	Q8TF50	670 aa	Predicted RBP	7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	DDX12P	Q92771	950 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	CCDC85A	Q96PX6	553 aa	Predicted RBP	7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	PSMD1	Q99460	953 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	STK31	Q9BXU1	1019 aa		7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	ZNF277	Q9NRM2	450 aa	Predicted RBP	7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	TRMT112	Q9UI30	125 aa	Known RBP	7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	7.32	□□□□□ -1.24
CUX1-208	ENST00000485792	ZBED9	Q6R2W3	1325 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	SNAP23	O00161	211 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	IRS4	O14654	1257 aa	Predicted RBP	7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	BCAR3	O75815	825 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	CSF1R	P07333	972 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	NBPF7	P0C2Y1	421 aa	Predicted RBP	7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	RLBP1	P12271	317 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	RARS	P54136	660 aa	Known RBP	7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	GCKR	Q14397	625 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	FAM161A	Q3B820	660 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	SP8	Q8IXZ3	490 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	RTKN2	Q8IZC4	609 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	ZNF687	Q8N1G0	1237 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	DNAAF4	Q8WXU2	420 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	VPS33B	Q9H267	617 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	GREM2	Q9H772	168 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	PLSCR2	Q9NRY7	297 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	CWC25	Q9NXE8	425 aa	Predicted RBP	7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	RNF181	Q9P0P0	153 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	ATP6V0A2	Q9Y487	856 aa		7.31	□□□□□ -1.24
CUX1-208	ENST00000485792	MYO5A	Q9Y4I1	1855 aa	Known RBP	7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	GRXCR2	A6NFK2	248 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	PPEF1	O14829	653 aa	Predicted RBP	7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	GTF2E1	P29083	439 aa	Predicted RBP	7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	CTSW	P56202	376 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	GPSM2	P81274	684 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	FKBP4	Q02790	459 aa	Known RBP eCLIP	7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	GRAP	Q13588	217 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	UBE3B	Q7Z3V4	1068 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	TMC4	Q7Z404	712 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	TXNRD3	Q86VQ6	643 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	TTLL11	Q8NHH1	800 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	GRAPL	Q8TC17	118 aa	Predicted RBP	7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	RBM17	Q96I25	401 aa	Known RBP	7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	SUCLG2	Q96I99	432 aa		7.3	□□□□□ -1.24
CUX1-208	ENST00000485792	PTPRC	P08575	1304 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	GLTPD2	A6NH11	291 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	FZD9	O00144	591 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	PDE8A	O60658	829 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	ALDH1L1	O75891	902 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	EGFR	P00533	1210 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	HSP90B1	P14625	803 aa	Known RBP	7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	HNRNPU	Q00839	825 aa	Known RBP eCLIP	7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	FKBP5	Q13451	457 aa	Predicted RBP	7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	CCDC93	Q567U6	631 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	ARHGAP45	Q92619	1136 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	TAOK3	Q9H2K8	898 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	KCNQ5	Q9NR82	932 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	PODXL2	Q9NZ53	605 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	POLL	Q9UGP5	575 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	OTOF	Q9HC10	1997 aa		7.29	□□□□□ -1.24
CUX1-208	ENST00000485792	AOX1	Q06278	1338 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	ZNF609	O15014	1411 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	DDN	O94850	711 aa	Predicted RBP	7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	OSBP	P22059	807 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	RFX5	P48382	616 aa	Predicted RBP	7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	SCNN1D	P51172	638 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	RPS8	P62241	208 aa	Known RBP	7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	NEXN	Q0ZGT2	675 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	AOC3	Q16853	763 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	RPGR	Q92834	1020 aa	Known RBP	7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	KRTAP3-3	Q9BYR6	98 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	KRTAP3-2	Q9BYR7	98 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	AKAP11	Q9UKA4	1901 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	LAMB1	P07942	1786 aa		7.28	□□□□□ -1.24
CUX1-208	ENST00000485792	NPHP1	O15259	732 aa		7.27	□□□□□ -1.25

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms